View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3741_high_4 (Length: 314)
Name: NF3741_high_4
Description: NF3741
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3741_high_4 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 264; Significance: 1e-147; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 18 - 304
Target Start/End: Complemental strand, 32541607 - 32541321
Alignment:
| Q |
18 |
gaattcttcttggctgtttcatgtttccaacagtacaaaataacattacgcaactgattgagtttcaggaagagtt-tgttgttaataacaggcattact |
116 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||| ||||| ||||||||||||||||||||||| |
|
|
| T |
32541607 |
gaattcttcttggctgtttcatgtttccgacagtacaaaataacattatgcaactgattgagtttcagga-gagttgtgttgttaataacaggcattact |
32541509 |
T |
|
| Q |
117 |
tgttagaacttcgaaccgtaatgaattagagcattttttcttgagatttctaatcttctaggatacaaatttcataaaaattgtacaattagctatgttt |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32541508 |
tgttagaacttcgaaccgtaatgaattagagcattttttcttgagatttctaatcttctaggatacaaatttcataaaaattgtacaattagctatgttt |
32541409 |
T |
|
| Q |
217 |
tgcactcaccaggggtctagcatcttttaccttgcaataacttttttcataaaaatagtcttgatgggacattgactctcctcctatg |
304 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32541408 |
tgcactcaccaggggtctagcatcttttaccttgcaataacttttttcataaaaatagtcttgatgggacattgactctcctcctatg |
32541321 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University