View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3741_high_7 (Length: 247)

Name: NF3741_high_7
Description: NF3741
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3741_high_7
NF3741_high_7
[»] chr6 (3 HSPs)
chr6 (1-115)||(3787974-3788089)
chr6 (188-243)||(3787845-3787900)
chr6 (26-61)||(26602425-26602460)
[»] chr3 (5 HSPs)
chr3 (21-58)||(379189-379226)
chr3 (26-57)||(8817383-8817414)
chr3 (19-56)||(9027140-9027177)
chr3 (21-58)||(21662881-21662918)
chr3 (21-57)||(51698110-51698146)
[»] chr2 (7 HSPs)
chr2 (21-57)||(13775827-13775863)
chr2 (19-59)||(41492891-41492931)
chr2 (21-55)||(42263468-42263502)
chr2 (26-59)||(9047750-9047783)
chr2 (22-55)||(30852715-30852748)
chr2 (26-59)||(37666605-37666638)
chr2 (26-58)||(41478635-41478667)
[»] chr1 (7 HSPs)
chr1 (19-55)||(16448203-16448239)
chr1 (26-60)||(12483622-12483656)
chr1 (22-55)||(11897053-11897086)
chr1 (19-56)||(11897149-11897186)
chr1 (26-58)||(14984939-14984971)
chr1 (19-55)||(17556848-17556884)
chr1 (21-57)||(26924209-26924245)
[»] scaffold0002 (1 HSPs)
scaffold0002 (21-55)||(492303-492337)
[»] chr7 (4 HSPs)
chr7 (21-55)||(5347721-5347755)
chr7 (26-58)||(1738443-1738475)
chr7 (19-47)||(7269412-7269440)
chr7 (25-57)||(22285696-22285728)
[»] chr5 (2 HSPs)
chr5 (21-59)||(1643460-1643498)
chr5 (21-55)||(9601591-9601625)
[»] scaffold0007 (1 HSPs)
scaffold0007 (21-54)||(77344-77377)
[»] chr8 (7 HSPs)
chr8 (29-58)||(7693157-7693186)
chr8 (20-57)||(33057591-33057628)
chr8 (23-59)||(3799710-3799746)
chr8 (22-54)||(8587170-8587202)
chr8 (19-47)||(28463618-28463646)
chr8 (21-57)||(34028499-34028535)
chr8 (21-57)||(42189919-42189955)


Alignment Details
Target: chr6 (Bit Score: 72; Significance: 7e-33; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 1 - 115
Target Start/End: Complemental strand, 3788089 - 3787974
Alignment:
Q  1 ccaacaaattttaattggcccaactttctcttataaataggaccggaaggagtattaaaatacaacatctttggtgtt-aaagaactaaacactatatca 99  Q
    |||||||||||| |||| |||||||||||||||||||||||| || | ||||||||||||||||||||||    |||| |||||||||||||||||||||    
T  3788089 ccaacaaattttgattgacccaactttctcttataaataggatcgtagggagtattaaaatacaacatctccactgttaaaagaactaaacactatatca 3787990  T
Q  100 tatcataagtatttac 115  Q
    ||||||||||||||||    
T  3787989 tatcataagtatttac 3787974  T

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Target: chr6; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 188 - 243
Target Start/End: Complemental strand, 3787900 - 3787845
Alignment:
Q  188 tataatgataagatggaacatcaacacgaagcatactcgtttatgtacctttgcta 243  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  3787900 tataatgataagatggaacatcaacaggaagcatactcgtttatgtacctttgcta 3787845  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 26 - 61
Target Start/End: Original strand, 26602425 - 26602460
Alignment:
Q  26 ttctcttataaataggaccggaaggagtattaaaat 61  Q
    |||||||||||||||||||||| |||||||||||||    
T  26602425 ttctcttataaataggaccggagggagtattaaaat 26602460  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000001; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 21 - 58
Target Start/End: Original strand, 379189 - 379226
Alignment:
Q  21 caactttctcttataaataggaccggaaggagtattaa 58  Q
    ||||||||||||||||||||||||||||||||||||||    
T  379189 caactttctcttataaataggaccggaaggagtattaa 379226  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 26 - 57
Target Start/End: Complemental strand, 8817414 - 8817383
Alignment:
Q  26 ttctcttataaataggaccggaaggagtatta 57  Q
    ||||||||||||||||||||||||||||||||    
T  8817414 ttctcttataaataggaccggaaggagtatta 8817383  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 19 - 56
Target Start/End: Complemental strand, 9027177 - 9027140
Alignment:
Q  19 cccaactttctcttataaataggaccggaaggagtatt 56  Q
    ||||||||| ||||||||||||||||||| ||||||||    
T  9027177 cccaactttatcttataaataggaccggagggagtatt 9027140  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 21 - 58
Target Start/End: Complemental strand, 21662918 - 21662881
Alignment:
Q  21 caactttctcttataaataggaccggaaggagtattaa 58  Q
    ||||||| ||||||||||||||||||| ||||||||||    
T  21662918 caactttttcttataaataggaccggagggagtattaa 21662881  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 57
Target Start/End: Complemental strand, 51698146 - 51698110
Alignment:
Q  21 caactttctcttataaataggaccggaaggagtatta 57  Q
    |||||||||||| |||||||||||||| |||||||||    
T  51698146 caactttctcttgtaaataggaccggagggagtatta 51698110  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 21 - 57
Target Start/End: Original strand, 13775827 - 13775863
Alignment:
Q  21 caactttctcttataaataggaccggaaggagtatta 57  Q
    ||||||||||||||||||||||||||| |||||||||    
T  13775827 caactttctcttataaataggaccggagggagtatta 13775863  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 59
Target Start/End: Complemental strand, 41492931 - 41492891
Alignment:
Q  19 cccaactttctcttataaataggaccggaaggagtattaaa 59  Q
    ||||| ||||||||||||||||||||||| |||||||||||    
T  41492931 cccaaatttctcttataaataggaccggagggagtattaaa 41492891  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 55
Target Start/End: Complemental strand, 42263502 - 42263468
Alignment:
Q  21 caactttctcttataaataggaccggaaggagtat 55  Q
    ||||||||||||||||||||||||||| |||||||    
T  42263502 caactttctcttataaataggaccggagggagtat 42263468  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 26 - 59
Target Start/End: Complemental strand, 9047783 - 9047750
Alignment:
Q  26 ttctcttataaataggaccggaaggagtattaaa 59  Q
    |||||||||||||||||||||| |||||||||||    
T  9047783 ttctcttataaataggaccggagggagtattaaa 9047750  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 22 - 55
Target Start/End: Original strand, 30852715 - 30852748
Alignment:
Q  22 aactttctcttataaataggaccggaaggagtat 55  Q
    |||||||||||||||||||||||||| |||||||    
T  30852715 aactttctcttataaataggaccggagggagtat 30852748  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 26 - 59
Target Start/End: Complemental strand, 37666638 - 37666605
Alignment:
Q  26 ttctcttataaataggaccggaaggagtattaaa 59  Q
    |||||||||||||||||||||| |||||||||||    
T  37666638 ttctcttataaataggaccggagggagtattaaa 37666605  T

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Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 26 - 58
Target Start/End: Complemental strand, 41478667 - 41478635
Alignment:
Q  26 ttctcttataaataggaccggaaggagtattaa 58  Q
    |||||||||||||||||||||| ||||||||||    
T  41478667 ttctcttataaataggaccggagggagtattaa 41478635  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 55
Target Start/End: Original strand, 16448203 - 16448239
Alignment:
Q  19 cccaactttctcttataaataggaccggaaggagtat 55  Q
    ||||||||||||||||||||||||||||| |||||||    
T  16448203 cccaactttctcttataaataggaccggagggagtat 16448239  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 26 - 60
Target Start/End: Complemental strand, 12483656 - 12483622
Alignment:
Q  26 ttctcttataaataggaccggaaggagtattaaaa 60  Q
    |||||||||||||||||||||| ||||||||||||    
T  12483656 ttctcttataaataggaccggagggagtattaaaa 12483622  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 22 - 55
Target Start/End: Complemental strand, 11897086 - 11897053
Alignment:
Q  22 aactttctcttataaataggaccggaaggagtat 55  Q
    |||||||||||||||||||||||||| |||||||    
T  11897086 aactttctcttataaataggaccggagggagtat 11897053  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 19 - 56
Target Start/End: Original strand, 11897149 - 11897186
Alignment:
Q  19 cccaactttctcttataaataggaccggaaggagtatt 56  Q
    ||||| ||||||||||||||||||||||| ||||||||    
T  11897149 cccaaatttctcttataaataggaccggagggagtatt 11897186  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 26 - 58
Target Start/End: Original strand, 14984939 - 14984971
Alignment:
Q  26 ttctcttataaataggaccggaaggagtattaa 58  Q
    |||||||||||||||||||||| ||||||||||    
T  14984939 ttctcttataaataggaccggagggagtattaa 14984971  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 55
Target Start/End: Original strand, 17556848 - 17556884
Alignment:
Q  19 cccaactttctcttataaataggaccggaaggagtat 55  Q
    ||||| ||||||||||||||||||||||| |||||||    
T  17556848 cccaagtttctcttataaataggaccggagggagtat 17556884  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 57
Target Start/End: Complemental strand, 26924245 - 26924209
Alignment:
Q  21 caactttctcttataaataggaccggaaggagtatta 57  Q
    ||||||| ||||||||||||||||||| |||||||||    
T  26924245 caactttttcttataaataggaccggagggagtatta 26924209  T

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Target: scaffold0002 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 55
Target Start/End: Complemental strand, 492337 - 492303
Alignment:
Q  21 caactttctcttataaataggaccggaaggagtat 55  Q
    ||||||||||||||||||||||||||| |||||||    
T  492337 caactttctcttataaataggaccggagggagtat 492303  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 55
Target Start/End: Complemental strand, 5347755 - 5347721
Alignment:
Q  21 caactttctcttataaataggaccggaaggagtat 55  Q
    ||||||||||||||||||||||||||| |||||||    
T  5347755 caactttctcttataaataggaccggagggagtat 5347721  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 26 - 58
Target Start/End: Complemental strand, 1738475 - 1738443
Alignment:
Q  26 ttctcttataaataggaccggaaggagtattaa 58  Q
    |||||||||||||||||||||| ||||||||||    
T  1738475 ttctcttataaataggaccggagggagtattaa 1738443  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 47
Target Start/End: Complemental strand, 7269440 - 7269412
Alignment:
Q  19 cccaactttctcttataaataggaccgga 47  Q
    |||||||||||||||||||||||||||||    
T  7269440 cccaactttctcttataaataggaccgga 7269412  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 57
Target Start/End: Complemental strand, 22285728 - 22285696
Alignment:
Q  25 tttctcttataaataggaccggaaggagtatta 57  Q
    ||||||||||||||||||||||| |||||||||    
T  22285728 tttctcttataaataggaccggagggagtatta 22285696  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 59
Target Start/End: Original strand, 1643460 - 1643498
Alignment:
Q  21 caactttctcttataaataggaccggaaggagtattaaa 59  Q
    ||||| ||||||||||||||||||||| |||||||||||    
T  1643460 caactgtctcttataaataggaccggagggagtattaaa 1643498  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 55
Target Start/End: Complemental strand, 9601625 - 9601591
Alignment:
Q  21 caactttctcttataaataggaccggaaggagtat 55  Q
    |||||||||||| ||||||||||||||||||||||    
T  9601625 caactttctcttgtaaataggaccggaaggagtat 9601591  T

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Target: scaffold0007 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 21 - 54
Target Start/End: Complemental strand, 77377 - 77344
Alignment:
Q  21 caactttctcttataaataggaccggaaggagta 54  Q
    ||||||||||||||||||||||||||| ||||||    
T  77377 caactttctcttataaataggaccggagggagta 77344  T

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Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 29 - 58
Target Start/End: Original strand, 7693157 - 7693186
Alignment:
Q  29 tcttataaataggaccggaaggagtattaa 58  Q
    ||||||||||||||||||||||||||||||    
T  7693157 tcttataaataggaccggaaggagtattaa 7693186  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 20 - 57
Target Start/End: Complemental strand, 33057628 - 33057591
Alignment:
Q  20 ccaactttctcttataaataggaccggaaggagtatta 57  Q
    |||||||| ||||||||||||||||||| |||||||||    
T  33057628 ccaactttgtcttataaataggaccggagggagtatta 33057591  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 59
Target Start/End: Complemental strand, 3799746 - 3799710
Alignment:
Q  23 actttctcttataaataggaccggaaggagtattaaa 59  Q
    |||||||||||||||| |||||||| |||||||||||    
T  3799746 actttctcttataaatgggaccggagggagtattaaa 3799710  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 54
Target Start/End: Complemental strand, 8587202 - 8587170
Alignment:
Q  22 aactttctcttataaataggaccggaaggagta 54  Q
    |||||||||||||||||||||||||| ||||||    
T  8587202 aactttctcttataaataggaccggagggagta 8587170  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 47
Target Start/End: Complemental strand, 28463646 - 28463618
Alignment:
Q  19 cccaactttctcttataaataggaccgga 47  Q
    |||||||||||||||||||||||||||||    
T  28463646 cccaactttctcttataaataggaccgga 28463618  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 57
Target Start/End: Original strand, 34028499 - 34028535
Alignment:
Q  21 caactttctcttataaataggaccggaaggagtatta 57  Q
    |||||||||||| |||||||||||||| |||||||||    
T  34028499 caactttctcttgtaaataggaccggagggagtatta 34028535  T

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Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 57
Target Start/End: Original strand, 42189919 - 42189955
Alignment:
Q  21 caactttctcttataaataggaccggaaggagtatta 57  Q
    ||||||| || ||||||||||||||||||||||||||    
T  42189919 caactttatcatataaataggaccggaaggagtatta 42189955  T

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