View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3741_low_3 (Length: 316)

Name: NF3741_low_3
Description: NF3741
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3741_low_3
NF3741_low_3
[»] chr2 (1 HSPs)
chr2 (9-300)||(13736388-13736679)


Alignment Details
Target: chr2 (Bit Score: 280; Significance: 1e-157; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 9 - 300
Target Start/End: Complemental strand, 13736679 - 13736388
Alignment:
Q  9 agcaaaggcaaaggaagcaaagaagaatgaaatgttgttgagttcatctggaattgtaaagtctgacaagtccaacaatttttcctgtgtgttcactaaa 108  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13736679 agcaatggcaaaggaagcaaagaagaatgaaatgttgttgagttcatctggaattgtaaagtctgacaagtccaacaatttttcctgtgtgttcactaaa 13736580  T
Q  109 aagggtcagaaaggattcaatcaggattgtcttattgtttgggaggtatgcctaaatattcagtttccgaatttccttgtctatgattttagctctattt 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13736579 aagggtcagaaaggattcaatcaggattgtcttattgtttgggaggtatgcctaaatattcagtttccgaatttccttgtctatgattttagctctattt 13736480  T
Q  209 ggatataaacagtttaattaagcgcatatagcataaacgtacttattgttaagtatttatgtagagaatatttttattacaaaagataaatg 300  Q
    || |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13736479 ggctataaacaatttaattaagcgcatatagcataaacgtacttattgttaagtatttatgtagagaatatttttattacaaaagataaatg 13736388  T

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