View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3742_high_1 (Length: 808)
Name: NF3742_high_1
Description: NF3742
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3742_high_1 |
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Alignment Details
Target: chr2 (Bit Score: 476; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 476; E-Value: 0
Query Start/End: Original strand, 17 - 577
Target Start/End: Original strand, 30245755 - 30246317
Alignment:
| Q |
17 |
cataggatcaactcacttaagaaacttcttgtgtcttacaagggcaggcacccagcttgaaatatcttgcaagtataagcgaaatattctgatgcgatgt |
116 |
Q |
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| T |
30245755 |
cataggatcaactcacttaagaaaattcttgtgtcttacaagggcaggcacccaccttgaaatatcttgcaagtataagcgaaatattctgatgcgatgt |
30245854 |
T |
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| Q |
117 |
actgattcaaaattaattcttgagcttttgtctgtttatttattctaatgaagttttgctgctttnnnnnnnnt--ttggtatagagagaaaatgggcag |
214 |
Q |
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| T |
30245855 |
actgattcaaaattaattctcgagcttttgtctgtttatttattctaatgaagttttgctgctttaaaaaaaaaaattggtatagatagaaaatgggcag |
30245954 |
T |
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| Q |
215 |
ctcaaaataagcaataagtatcatggaaaagttattgtagaacccttgccaagaagggaacacatggaattaatcaacaagaacttgttcaaaatcaaac |
314 |
Q |
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| T |
30245955 |
ctcaaaataagcaataagtatcatggaaaagttattgtagaacccttgccaagaagggaacacatggaattaatcaacaagaacttgttcaaaattaaac |
30246054 |
T |
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| Q |
315 |
tgagggcagaggcagagctaagctaggtgtcacactgtcatgtttgtattcttaaaactataataatgtaggaaatggagagcatcctttccattgtagg |
414 |
Q |
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| T |
30246055 |
tgagggcagaggcagagctaagctaggtgtcacactgtcatgtttgtattcttaaaactatagtaatggaggaaatggagatcatccgttccattgtaga |
30246154 |
T |
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| Q |
415 |
tatacccctttttgtcgtcatccctctctcacctctttcccaagttagaagacattgttgaatttcctctttccctctctccttggtcttcttgacagca |
514 |
Q |
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| T |
30246155 |
tatacccctttttgtcgtcatccctctctcacctctttcccaagttagaagacattgttgaatttcttctttccctctctccttggtcttcttgacagca |
30246254 |
T |
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| Q |
515 |
gtagtctgtgggattatgcagaggcagaatggtgtaacctatcgacaatatcttgaggttagt |
577 |
Q |
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| T |
30246255 |
gtagtctgtgggattatgcagaggcagaatggtgcaacctatcgacaatatcttgaggttagt |
30246317 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 153; E-Value: 1e-80
Query Start/End: Original strand, 572 - 744
Target Start/End: Original strand, 30246609 - 30246781
Alignment:
| Q |
572 |
gttagtcatgacctgacctacaccaaacatccaccgtatgtgatgataacagctcgacaatggagccactccccacacttgtgtttaggggctccagtaa |
671 |
Q |
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| T |
30246609 |
gttagtcatgacctgacctacaccaaacatccaccgtatgtgatgataacagctcgacaatggagccactccccacacttgtgcttaggggctccggtaa |
30246708 |
T |
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| Q |
672 |
agactgtgctggatgatgggacttcctcctgcttccctctttatcatcttttttattcatggttatccacact |
744 |
Q |
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| T |
30246709 |
agactgtgctggacgatgggacttcctcctgcttccctctttatcatcttttttagtcatggttatccgcact |
30246781 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 19 - 109
Target Start/End: Original strand, 30782777 - 30782869
Alignment:
| Q |
19 |
taggatcaactcacttaagaaacttcttgtgtcttacaagggcag--gcacccagcttgaaatatcttgcaagtataagcgaaatattctgat |
109 |
Q |
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| T |
30782777 |
taggatcaacccccttaagaaaattgttgtgttttacaagggcagaggcacccaccttgaaatatcttgcaagtataagcgaaatattctgat |
30782869 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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