View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3742_high_10 (Length: 240)
Name: NF3742_high_10
Description: NF3742
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3742_high_10 |
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| [»] scaffold0086 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 208; Significance: 1e-114; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 2 - 221
Target Start/End: Complemental strand, 40925675 - 40925456
Alignment:
| Q |
2 |
ttcatcaacaccgaaacaagttggctagttgagacatggactcatgcaaataaggtatgtcgtcacactgttatgattatcttatctaacgagtttttca |
101 |
Q |
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| T |
40925675 |
ttcatcaacaccgaaacaagttggctagttgagacatggactcatgcaaataaggtatgtcgtcacactgttatgagtatcttatctaacgagttgttca |
40925576 |
T |
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| Q |
102 |
atgtgtatttccggtacaaggaagcaaaagaaacatgggattcaatgtttctgaaatacacggttgaaggcatgctggaaagaaaaacttcgccatctgg |
201 |
Q |
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| T |
40925575 |
atgtgtatttccagtacaaggaagcaaaagaaacatgggattcaatgtttctgaaatacacggttgaaggcatgctggaaagaaaaacttcgccatctgg |
40925476 |
T |
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| Q |
202 |
caactatgaacaatgataaa |
221 |
Q |
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|||||||||||||||||||| |
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| T |
40925475 |
caactatgaacaatgataaa |
40925456 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 28 - 70
Target Start/End: Original strand, 40926018 - 40926060
Alignment:
| Q |
28 |
agttgagacatggactcatgcaaataaggtatgtcgtcacact |
70 |
Q |
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| T |
40926018 |
agttgagacatggactcatacaaataaggtatgtcgtcacact |
40926060 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 44 - 193
Target Start/End: Original strand, 44313626 - 44313773
Alignment:
| Q |
44 |
catgcaaataaggtatgtcgtcacactgttatgattatcttatctaacgagtttttcaatgtgtatttccggtacaaggaagcaaaagaaacatgggatt |
143 |
Q |
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| T |
44313626 |
catgcaaataaggtatgtcgtcacactattatgactaccttgtctaatgagttattcgatgtctactgttcgtacaaggaagcgaaggaaatatgggatt |
44313725 |
T |
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| Q |
144 |
caatgtttctgaaatacacggttgaaggcatgctggaaagaaaaacttcg |
193 |
Q |
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| T |
44313726 |
ccatggttctgaaatataccgctgaa--aatgctggaaagaaaaacttcg |
44313773 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 44 - 193
Target Start/End: Complemental strand, 34099266 - 34099119
Alignment:
| Q |
44 |
catgcaaataaggtatgtcgtcacactgttatgattatcttatctaacgagtttttcaatgtgtatttccggtacaaggaagcaaaagaaacatgggatt |
143 |
Q |
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| T |
34099266 |
catgcaaataaggtatgtcgtcacactattatgactaccttgtctaatgagttattcgatgtctactgttcgtacaaggaagcgaaggaaatatgggatt |
34099167 |
T |
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| Q |
144 |
caatgtttctgaaatacacggttgaaggcatgctggaaagaaaaacttcg |
193 |
Q |
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| T |
34099166 |
ccatggttctgaaatataccgctgaa--aatgctggaaagaaaaacttcg |
34099119 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0086 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: scaffold0086
Description:
Target: scaffold0086; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 44 - 193
Target Start/End: Complemental strand, 40905 - 40758
Alignment:
| Q |
44 |
catgcaaataaggtatgtcgtcacactgttatgattatcttatctaacgagtttttcaatgtgtatttccggtacaaggaagcaaaagaaacatgggatt |
143 |
Q |
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| T |
40905 |
catgcaaataaggtatgtcgccacactattatgactaccttgtctaatgagttattcgatgtctactgttcgtacaaggaagcgaaggaaatatgggatt |
40806 |
T |
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| Q |
144 |
caatgtttctgaaatacacggttgaaggcatgctggaaagaaaaacttcg |
193 |
Q |
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| T |
40805 |
ccatggttctgaaatacaacgctgaa--aatgctggaaagaaaaacttcg |
40758 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 40 - 157
Target Start/End: Complemental strand, 6717189 - 6717069
Alignment:
| Q |
40 |
gactcatgcaaat-aaggtatgtcgtcacactgttatgattatcttat--ctaacgagtttttcaatgtgtatttccggtacaaggaagcaaaagaaaca |
136 |
Q |
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| T |
6717189 |
gactcatgcaaattaaggtatgccatcacactattatgagtaccttatatctaatgagttgttccatgtgtacttctcgtacaaggaagcgaaaggaata |
6717090 |
T |
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| Q |
137 |
tgggattcaatgtttctgaaa |
157 |
Q |
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| T |
6717089 |
tgggattcaatggttctgaaa |
6717069 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 115 - 192
Target Start/End: Original strand, 6716452 - 6716526
Alignment:
| Q |
115 |
gtacaaggaagcaaaagaaacatgggattcaatgtttctgaaatacacggttgaaggcatgctggaaagaaaaacttc |
192 |
Q |
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| T |
6716452 |
gtacaaggaagcgaaagaaatatgggattcaatgttt-tgaaatacattgttgaag--atgctggaaagaataacttc |
6716526 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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