View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3742_high_11 (Length: 236)
Name: NF3742_high_11
Description: NF3742
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3742_high_11 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 205; Significance: 1e-112; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 41987459 - 41987687
Alignment:
| Q |
1 |
ttccttttcagatatgatgatgtaccagagctgtatatcatgagcgtacaaactccatctgcataagctgtgtcaattgcaagttgcaaccgcactttcc |
100 |
Q |
| |
|
|||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
41987459 |
ttccttttcagatacgatgatgtaccagagttgtatatcatgagcgtacaaactccatctgcataagctgtgtcaattgcaagttgcaactgcactttcc |
41987558 |
T |
|
| Q |
101 |
tcagtcctctggctatggcccaggttcaacatttctcataactagccactgttcactagaatctagatatataacttcttttgttaatcaatacaaaaaa |
200 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41987559 |
tcagtcctatggctatggcccaggttcaacatttctcataactagccacggttcactagaatctagatatataacttcttttgttaatcaatacaaaaaa |
41987658 |
T |
|
| Q |
201 |
tattcctttctcatacagtgatgatgtcc |
229 |
Q |
| |
|
||||||||||||||||||||||| ||||| |
|
|
| T |
41987659 |
tattcctttctcatacagtgatgttgtcc |
41987687 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 35 - 103
Target Start/End: Original strand, 41984934 - 41985002
Alignment:
| Q |
35 |
atatcatgagcgtacaaactccatctgcataagctgtgtcaattgcaagttgcaaccgcactttcctca |
103 |
Q |
| |
|
|||| |||||| || ||| |||||||||||| | |||||||||||||||||| ||| | |||||||||| |
|
|
| T |
41984934 |
atatgatgagcatagaaattccatctgcatatgttgtgtcaattgcaagttgtaactgtactttcctca |
41985002 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 188 - 228
Target Start/End: Original strand, 41985019 - 41985059
Alignment:
| Q |
188 |
tcaatacaaaaaatattcctttctcatacagtgatgatgtc |
228 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||| |||| |
|
|
| T |
41985019 |
tcaatacaaaaaatattcctttgtcatacagtgatgttgtc |
41985059 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University