View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3742_high_5 (Length: 446)
Name: NF3742_high_5
Description: NF3742
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3742_high_5 |
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Alignment Details
Target: chr7 (Bit Score: 391; Significance: 0; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 1 - 428
Target Start/End: Original strand, 40457737 - 40458170
Alignment:
| Q |
1 |
gatacacaaacattctttaatttaaagatgatgaagaagcatgtggattcatcttggcttacactctcacagccatcttcatcaccaccactccataagc |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40457737 |
gatacacaaacattctttaatttaaagatgatgaagaagcatgtggatccatcttggcttacactctcacagccatcttcatcaccaccactccataagc |
40457836 |
T |
|
| Q |
101 |
ctttaccatctgaatacacaccatcatcaccccctaggcctccaccatttgaatacacgccattaacaccccccacacgccctattgatcctcaaacatt |
200 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
40457837 |
ctttaccatctgaatacacaccatcatcaccccctagacctccaccatttgaatacacgccattaacaccctccacacgccctattgatcctcaaacatt |
40457936 |
T |
|
| Q |
201 |
cttctattccgaactcatcacttctcttcctcgtcctcctaattttgactctaaccctaataatcttgccctaattcccaaattaccattccactatcat |
300 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
40457937 |
cttctattccgaactcatcacttctcttcctcgtcctcctaattttgactctaaccctaataatcttgccctaattcccaaattaccattccactatcat |
40458036 |
T |
|
| Q |
301 |
------caagaacaagatctttctcctcctaccaataaggtgctgggacgacgtcaacgtattctaccaaagcaccaacctgtgaaaaagagacgactaa |
394 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40458037 |
caagaacaagaacaagatctttctcctcctaccaataaggtgctgggacgacgtcaacgtattctaccaaagcaccaacctgtgaaaaagagacgactaa |
40458136 |
T |
|
| Q |
395 |
ctaagagcatgacagttccaccgccattcccatg |
428 |
Q |
| |
|
||||||||||| |||||||||| ||||||||||| |
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|
| T |
40458137 |
ctaagagcatggcagttccaccaccattcccatg |
40458170 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 1 - 428
Target Start/End: Complemental strand, 40280613 - 40280180
Alignment:
| Q |
1 |
gatacacaaacattctttaatttaaagatgatgaagaagcatgtggattcatcttggcttacactctcacagccatcttcatcaccaccactccataagc |
100 |
Q |
| |
|
|||||||||||| |||| |||||||||| ||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||| | ||||| |
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|
| T |
40280613 |
gatacacaaacaatcttgaatttaaagaagatgaagaagcatgtggatccatcatggcttacactctcacagccatcttcatcaccaccacttcctaagc |
40280514 |
T |
|
| Q |
101 |
ctttaccatctgaatacacaccatcatcaccccctaggcctccaccatttgaatacacgccattaacaccccccacacgccctattgatcctcaaacatt |
200 |
Q |
| |
|
|||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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|
| T |
40280513 |
ctttcccatctgaatggacaccatcatcaccccctaggcctccaccatttgaatacacgccattaacaccctccacacgccctattgatcctcaaacatt |
40280414 |
T |
|
| Q |
201 |
cttctattccgaactcatcacttctcttcctcgtcctcctaattttgactctaaccctaataatcttgccctaattcccaaattaccattccactatcat |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
40280413 |
cttctattccgaactcatcacttctcttcctcgtcctcctaattttgactctaaccctaataatcttgccctaattcccaaattaccattccactatcat |
40280314 |
T |
|
| Q |
301 |
caagaac------aagatctttctcctcctaccaataaggtgctgggacgacgtcaacgtattctaccaaagcaccaacctgtgaaaaagagacgactaa |
394 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
40280313 |
caagaacaagaacaagatctttctcctcctaccaataaggtgctgggacgacgtcaacgtattctaccaaagcaccaacctgtgaaaaagagacgactaa |
40280214 |
T |
|
| Q |
395 |
ctaagagcatgacagttccaccgccattcccatg |
428 |
Q |
| |
|
||||||||||| |||||||||| ||||||||||| |
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|
| T |
40280213 |
ctaagagcatggcagttccaccaccattcccatg |
40280180 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 1 - 132
Target Start/End: Complemental strand, 40280785 - 40280654
Alignment:
| Q |
1 |
gatacacaaacattctttaatttaaagatgatgaagaagcatgtggattcatcttggcttacactctcacagccatcttcatcaccaccactccataagc |
100 |
Q |
| |
|
|||||||||||| |||| |||||||||| ||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||| | ||||| |
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|
| T |
40280785 |
gatacacaaacaatcttgaatttaaagaagatgaagaagcatgtggatccatcatggcttacactctcacagccatcttcatcaccaccacttcctaagc |
40280686 |
T |
|
| Q |
101 |
ctttaccatctgaatacacaccatcatcaccc |
132 |
Q |
| |
|
|||| |||||||||| ||||||||||||||| |
|
|
| T |
40280685 |
ctttcccatctgaatggacaccatcatcaccc |
40280654 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 144 - 283
Target Start/End: Complemental strand, 40285452 - 40285310
Alignment:
| Q |
144 |
accatttgaatacacgccattaacaccccccacacg---ccctattgatcctcaaacattcttctattccgaactcatcacttctcttcctcgtcctcct |
240 |
Q |
| |
|
||||| ||||||||| |||| |||||||| ||| || |||||||||||| || ||||||||||||||||||||||| || |||||||| ||||||| |
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|
| T |
40285452 |
accatctgaatacacaccatcaacaccccgcacgcgtctccctattgatccacagacattcttctattccgaactcataaccaatcttcctcatcctcct |
40285353 |
T |
|
| Q |
241 |
aattttgactctaaccctaataatcttgccctaattcccaaat |
283 |
Q |
| |
|
|||||||||||| ||| | |||||||||||||||| ||||||| |
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|
| T |
40285352 |
aattttgactctgaccttgataatcttgccctaatccccaaat |
40285310 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 74 - 133
Target Start/End: Complemental strand, 40285483 - 40285424
Alignment:
| Q |
74 |
catcttcatcaccaccactccataagcctttaccatctgaatacacaccatcatcacccc |
133 |
Q |
| |
|
||||||||||||||||||||| ||||| ||||||||||||||||||||||||| |||||| |
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|
| T |
40285483 |
catcttcatcaccaccactccctaagcatttaccatctgaatacacaccatcaacacccc |
40285424 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 122 - 168
Target Start/End: Complemental strand, 40280853 - 40280807
Alignment:
| Q |
122 |
catcatcaccccctaggcctccaccatttgaatacacgccattaaca |
168 |
Q |
| |
|
||||||| || |||||||||||||||| ||||||||| ||||||||| |
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|
| T |
40280853 |
catcatcgccacctaggcctccaccatctgaatacacaccattaaca |
40280807 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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