View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3742_low_12 (Length: 201)
Name: NF3742_low_12
Description: NF3742
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3742_low_12 |
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Alignment Details
Target: chr7 (Bit Score: 161; Significance: 4e-86; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 161; E-Value: 4e-86
Query Start/End: Original strand, 1 - 185
Target Start/End: Original strand, 40457737 - 40457921
Alignment:
| Q |
1 |
gatacacaaacattctttaatttaaagatgatgaagaagcatgtggattcatcttggcttacactctcacagccatcttcatcaccaccactccataagc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40457737 |
gatacacaaacattctttaatttaaagatgatgaagaagcatgtggatccatcttggcttacactctcacagccatcttcatcaccaccactccataagc |
40457836 |
T |
|
| Q |
101 |
ctttaccatctgaatacacaccatcatcaccccctaggcctccaccatttgaatatacaccattaacaccccctacacgccctat |
185 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||| || |||||||||||| | ||||||||||| |
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| T |
40457837 |
ctttaccatctgaatacacaccatcatcaccccctagacctccaccatttgaatacacgccattaacaccctccacacgccctat |
40457921 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 129; E-Value: 6e-67
Query Start/End: Original strand, 1 - 185
Target Start/End: Complemental strand, 40280613 - 40280429
Alignment:
| Q |
1 |
gatacacaaacattctttaatttaaagatgatgaagaagcatgtggattcatcttggcttacactctcacagccatcttcatcaccaccactccataagc |
100 |
Q |
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|||||||||||| |||| |||||||||| ||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||| | ||||| |
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| T |
40280613 |
gatacacaaacaatcttgaatttaaagaagatgaagaagcatgtggatccatcatggcttacactctcacagccatcttcatcaccaccacttcctaagc |
40280514 |
T |
|
| Q |
101 |
ctttaccatctgaatacacaccatcatcaccccctaggcctccaccatttgaatatacaccattaacaccccctacacgccctat |
185 |
Q |
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|||| |||||||||| |||||||||||||||||||||||||||||||||||||| || |||||||||||| | ||||||||||| |
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| T |
40280513 |
ctttcccatctgaatggacaccatcatcaccccctaggcctccaccatttgaatacacgccattaacaccctccacacgccctat |
40280429 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 92; E-Value: 7e-45
Query Start/End: Original strand, 1 - 132
Target Start/End: Complemental strand, 40280785 - 40280654
Alignment:
| Q |
1 |
gatacacaaacattctttaatttaaagatgatgaagaagcatgtggattcatcttggcttacactctcacagccatcttcatcaccaccactccataagc |
100 |
Q |
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|
|||||||||||| |||| |||||||||| ||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||| | ||||| |
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| T |
40280785 |
gatacacaaacaatcttgaatttaaagaagatgaagaagcatgtggatccatcatggcttacactctcacagccatcttcatcaccaccacttcctaagc |
40280686 |
T |
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| Q |
101 |
ctttaccatctgaatacacaccatcatcaccc |
132 |
Q |
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|||| |||||||||| ||||||||||||||| |
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| T |
40280685 |
ctttcccatctgaatggacaccatcatcaccc |
40280654 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 74 - 133
Target Start/End: Complemental strand, 40285483 - 40285424
Alignment:
| Q |
74 |
catcttcatcaccaccactccataagcctttaccatctgaatacacaccatcatcacccc |
133 |
Q |
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||||||||||||||||||||| ||||| ||||||||||||||||||||||||| |||||| |
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| T |
40285483 |
catcttcatcaccaccactccctaagcatttaccatctgaatacacaccatcaacacccc |
40285424 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 122 - 168
Target Start/End: Complemental strand, 40280853 - 40280807
Alignment:
| Q |
122 |
catcatcaccccctaggcctccaccatttgaatatacaccattaaca |
168 |
Q |
| |
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||||||| || |||||||||||||||| |||||| |||||||||||| |
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| T |
40280853 |
catcatcgccacctaggcctccaccatctgaatacacaccattaaca |
40280807 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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