View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3742_low_2 (Length: 567)
Name: NF3742_low_2
Description: NF3742
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3742_low_2 |
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Alignment Details
Target: chr6 (Bit Score: 421; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 421; E-Value: 0
Query Start/End: Original strand, 5 - 551
Target Start/End: Complemental strand, 12753454 - 12752910
Alignment:
| Q |
5 |
acacgatcacaccgctaataatttnnnnnnnntcacataatttagtataatcatatatacgtgtcgatgtcatgtcgatgttgaacattaacgcgtgtcc |
104 |
Q |
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| T |
12753454 |
acacgatcacaccgctaataatttgagaaaaatcaca--atttaatataatcatatatatgtgtcggtgtcatgtcgatgtcgaacattaatgcgtgtcc |
12753357 |
T |
|
| Q |
105 |
gacaccaaaacacgtttaatccaaggactatgtgcacttcatagatccaaagaaactaacataatcacatgtt-actattattttcctataagagaaagt |
203 |
Q |
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|||||| |||||| |||||||| |||| ||| |||||||||||||||||||||||||||||||||||| | || |||||||||||||||||||||||||| |
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| T |
12753356 |
gacaccgaaacacatttaatccgaggagtatatgcacttcatagatccaaagaaactaacataatcacgtctttactattattttcctataagagaaagt |
12753257 |
T |
|
| Q |
204 |
gatcgaacgggtaaccaacccaccaactttgccacacatgttggtataattattccatttttgtaagatatatataatataatcctaaaaaataggttgt |
303 |
Q |
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| T |
12753256 |
gatcgaaccggtaaccaacccaccaactttgccacacatgttggtataatcattccatttttgtaa-agatatataatataatcctaaaaaataggttgt |
12753158 |
T |
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| Q |
304 |
atatttaccatgattgtaacgattgtgctataacaataattggatgatcatgcatatagtggtccattaagatcttatatgtcaatggtgttttcatatg |
403 |
Q |
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||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
12753157 |
atatttatcatgattgtaacgtttgtgctataacaataattggatgatcatgcatatagtggtccattaagatcttatatgtcaatggtgttctcatatg |
12753058 |
T |
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| Q |
404 |
atgtgaccataagaaggttaaaatcagttggctaagacaatgacaattgaccatctcgtagaagaaaaatgcaaccatcttaggtcttacaagatatcca |
503 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
12753057 |
atgtgaccataagaaggttaaaatcagttggctaagacaatgacaattgaccatctcgtagaagaaaaatgcaaccatattaggtcttacaagatatcca |
12752958 |
T |
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| Q |
504 |
ctaaggtccattcaaaatgacatatcactaggcaatttgggtgcataa |
551 |
Q |
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| T |
12752957 |
ctaaggtccattcaaaatgacatatcactaggcaatttgggtgcataa |
12752910 |
T |
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