View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3742_low_3 (Length: 499)
Name: NF3742_low_3
Description: NF3742
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3742_low_3 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 459; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 459; E-Value: 0
Query Start/End: Original strand, 13 - 499
Target Start/End: Original strand, 37091467 - 37091953
Alignment:
| Q |
13 |
aaaataaaatgcttgaagttgtttaaatgtaccttgatcaactgtgaatgtgtaagcattagaaccgcgaccattgatgataagcccgtctggtaaagga |
112 |
Q |
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| T |
37091467 |
aaaataaaatgcttgaagttgtttaaatgtaccttgatcaaccgtgaatgtgtaagcattagaaccgcgaccattgatgataagcccgtctggtaaagga |
37091566 |
T |
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| Q |
113 |
aggtcacttccattgtctagaatggccttcaaattctgaaagaagaaatacataaatataaatatacttatagtttatgtgagatttctcaaatattgaa |
212 |
Q |
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| T |
37091567 |
aggtcacttccattgtctagaatggccttcaaatcctgaaagaagaaatacataaatataaatatacttatagtttatgtgagatttctcaaatattgaa |
37091666 |
T |
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| Q |
213 |
cactacttctcaaatggcacaaaatgatagcagaagtcattgaattgagatcagacgacttagctcacacattaaataaattaattttaaacgatcttaa |
312 |
Q |
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| T |
37091667 |
cactacttctcaaatggcacaaaatgatagcagaagacattgaattgagatcagacgacttagctcacacattcaataaattaattttaaacgatcttaa |
37091766 |
T |
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| Q |
313 |
ctattgatttaaataagacggtcgagatcattaactgcgtgacacatttactacgcgaaatatgtctacttctagaagagtaaagctacttacagtgtga |
412 |
Q |
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| T |
37091767 |
ctaaagatttaaataagacggtcgagatcattaactgcgtgacacatttactacacgaaatatgtctacttctagaagagtaaagctacttacagtgtga |
37091866 |
T |
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| Q |
413 |
tttctgttgtaccaatctcctgccaatatggtgaaatcattcgatggaggaggaaacggtacaggaatcatagggcggctgttaatt |
499 |
Q |
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| T |
37091867 |
tttctgttgtaccaatctcctgccaatatggtgaaatcattcgatggaggaggaaacggtacaggaatcatagggcggctgttaatt |
37091953 |
T |
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Target: chr4 (Bit Score: 49; Significance: 8e-19; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 42 - 114
Target Start/End: Original strand, 17137070 - 17137142
Alignment:
| Q |
42 |
taccttgatcaactgtgaatgtgtaagcattagaaccgcgaccattgatgataagcccgtctggtaaaggaag |
114 |
Q |
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| T |
17137070 |
taccttgatcaaccgtgaatgtgtaagcattagaaccgcgaccattgatgacaagtccatcagggaaaggaag |
17137142 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 42 - 123
Target Start/End: Complemental strand, 17346723 - 17346642
Alignment:
| Q |
42 |
taccttgatcaactgtgaatgtgtaagcattagaaccgcgaccattgatgataagcccgtctggtaaaggaaggtcacttcc |
123 |
Q |
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| T |
17346723 |
taccttgatcaaccgcgaatgtgtaagcattggaaccgcgaccattgatgacaagtccatccgggaaaggaagatcacttcc |
17346642 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 407 - 482
Target Start/End: Original strand, 17137259 - 17137334
Alignment:
| Q |
407 |
gtgtgatttctgttgtaccaatctcctgccaatatggtgaaatcattcgatggaggaggaaacggtacaggaatca |
482 |
Q |
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| T |
17137259 |
gtgtgatttcttttgtaccaatctcctgccagtatggtgaaatctccggatggaggatcaaaaggtacaggaatca |
17137334 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 407 - 450
Target Start/End: Complemental strand, 17346535 - 17346492
Alignment:
| Q |
407 |
gtgtgatttctgttgtaccaatctcctgccaatatggtgaaatc |
450 |
Q |
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| T |
17346535 |
gtgtgatttcttttgtaccaatctcctgccaatatggtgtaatc |
17346492 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 289 - 332
Target Start/End: Complemental strand, 54634187 - 54634144
Alignment:
| Q |
289 |
taaattaattttaaacgatcttaactattgatttaaataagacg |
332 |
Q |
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| T |
54634187 |
taaatcaattttaaacgattttaactattgatttaaatcagacg |
54634144 |
T |
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