View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3742_low_4 (Length: 454)
Name: NF3742_low_4
Description: NF3742
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3742_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 329; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 9 - 436
Target Start/End: Original strand, 12666202 - 12666635
Alignment:
| Q |
9 |
acatcatcaaccacaaaacttaggtataattactttggtaaaacaaacctatattaaaaaagacttacttgttttgctacacgcacg------tacaccc |
102 |
Q |
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|||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| | ||||| |
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| T |
12666202 |
acatcaccaaccaaaaaacttaggtataattactttggtaaaacaaacctatattaaaaaagacttactagttttgctacacgcacgggtacgtccaccc |
12666301 |
T |
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| Q |
103 |
attctttttgctaaatgcaccaccaactatttcacaggtgtcttttattttctactacctcaaccttttccacttctatttggattttttctatatacac |
202 |
Q |
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| T |
12666302 |
attctttttgctaaatgcaccaccaactatttcacaggtgtcttttattttctactacctcaaccttttccacttctatttggatttttt-tatatacac |
12666400 |
T |
|
| Q |
203 |
aaaacactagaaaacattgtttatcttaataaaagttnnnnnnnnnnnnnnnnn-gtacttgcattagtatatatatcaggggcattatagcaaataata |
301 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12666401 |
aaaacactagaaaacattgtttatcttaataaaagttaaaaaaaaaaaaaaaaaagtacttgcattagtatatatatcaggggcattatagcaaataata |
12666500 |
T |
|
| Q |
302 |
atctacatcaagtccccccaatggggctctatgtggtattccctttcttctcttggctgttctgtaattaactgaagttgggggtggtgtagatggtgtg |
401 |
Q |
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| T |
12666501 |
atctacatcaagtccccccaatggggctctatgtggtattccctttcttctcttggctgttctgtaattaactgaagttgggggtggtgtagatggtgtg |
12666600 |
T |
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| Q |
402 |
aagctttgaactttgattttcttctgacggctatg |
436 |
Q |
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| T |
12666601 |
aagctttgaactttgattttcttctgacggctatg |
12666635 |
T |
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Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 312 - 409
Target Start/End: Original strand, 27795567 - 27795661
Alignment:
| Q |
312 |
agtccccccaatggggctctatgtggtattccctttcttctcttggctgttctgtaattaactgaagttgggggtggtgtagatggtgtgaagctttg |
409 |
Q |
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| T |
27795567 |
agtcctcccattggggcacgatgcggaattccctttcttcttttggctgatctgtaattgact---gttggtggtggtgttgaaggagtgaagctttg |
27795661 |
T |
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