View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3742_low_6 (Length: 377)
Name: NF3742_low_6
Description: NF3742
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3742_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 152; Significance: 2e-80; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 211 - 362
Target Start/End: Complemental strand, 40150982 - 40150831
Alignment:
| Q |
211 |
gtatctcttaaacttggttaatgcaaaaataattatttccaattatgcctgatgcatactacctttaaccatcataattaagcatagacataaataagat |
310 |
Q |
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| T |
40150982 |
gtatctcttaaacttggttaatgcaaaaataattatttccaattatgcctgatgcatactacctttaaccatcataattaagcatagacataaataagat |
40150883 |
T |
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| Q |
311 |
aaaagaattcaacaaagcttagctatttagaatgcaacctcaagtaccatat |
362 |
Q |
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| T |
40150882 |
aaaagaattcaacaaagcttagctatttagaatgcaacctcaagtaccatat |
40150831 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 14 - 225
Target Start/End: Complemental strand, 40151201 - 40151004
Alignment:
| Q |
14 |
aacacattggagcctagggaagagttttctacacaacagcatggtgaagctgt--aacacgttatttatgttgtttaagatataggataacatttataaa |
111 |
Q |
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| T |
40151201 |
aacacattggagcctagggaagagttttctacacaacagcatggtgaagctgtgtaacacgttatttatgttgtttaagatataagataacatttataaa |
40151102 |
T |
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| Q |
112 |
tagtaacaaggatttatcacgtattaatacagtttggtcattgctctagtctactaatgtttagt-----cacgtaaaactagccatgttttattctaga |
206 |
Q |
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| T |
40151101 |
tagtaacaaggatttatcac---------------------tcctctagtctactaatgtttagtgaaaacaagtaaaactagccatgttttattctaga |
40151023 |
T |
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