View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3742_low_7 (Length: 308)
Name: NF3742_low_7
Description: NF3742
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3742_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 260; Significance: 1e-145; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 10 - 289
Target Start/End: Complemental strand, 41987481 - 41987203
Alignment:
| Q |
10 |
acatcatcatatctgaaaaggaaggatcactcacgtagttaaatatctagggactacatttggatgttgtgtcaggtatctaataaagttaggggttcca |
109 |
Q |
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| T |
41987481 |
acatcatcgtatctgaaaaggaaggatcacacacgtagttaaatatctagggactacatttggatgttgtgtcaggtatctaataaagttaggggttcca |
41987382 |
T |
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| Q |
110 |
tgaatatataagacataattggtatgtacctttggtttattagaacactatgttgatcatggttatcaaacagagattcaaatttgtgaatttggaagat |
209 |
Q |
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| T |
41987381 |
tgaatatataagacataattggtatgtacctttggtttattagaacactatgttgatcatggttatcaaacagagattcaaa-ttgtgaatttggaagat |
41987283 |
T |
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| Q |
210 |
atacgatatcaataaaaatatgacatctttaagtaagaaaaaagtgaaatagcaaaaatataatttgttatagtcttata |
289 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
41987282 |
atacgatatcaataaaaatatgacatctttaagtaagaaaaaggtgaaatagcaaaaatataatttgttatagtcttata |
41987203 |
T |
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