View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3743_high_10 (Length: 454)

Name: NF3743_high_10
Description: NF3743
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3743_high_10
NF3743_high_10
[»] chr5 (7 HSPs)
chr5 (165-368)||(30866675-30866878)
chr5 (213-363)||(31194267-31194417)
chr5 (21-164)||(129280-129423)
chr5 (165-222)||(31193908-31193965)
chr5 (64-162)||(128663-128761)
chr5 (100-165)||(31600447-31600512)
chr5 (400-436)||(30866646-30866682)
[»] chr1 (6 HSPs)
chr1 (20-164)||(49400211-49400355)
chr1 (54-161)||(49399549-49399656)
chr1 (36-164)||(27890568-27890696)
chr1 (36-164)||(27891227-27891355)
chr1 (100-165)||(49385084-49385149)
chr1 (100-164)||(1764516-1764580)
[»] chr4 (10 HSPs)
chr4 (12-165)||(52237634-52237786)
chr4 (56-164)||(52238270-52238378)
chr4 (54-162)||(53327458-53327566)
chr4 (54-158)||(48957414-48957518)
chr4 (36-164)||(55633554-55633682)
chr4 (100-165)||(5469968-5470033)
chr4 (100-165)||(48956636-48956701)
chr4 (21-109)||(53320061-53320149)
chr4 (90-164)||(36386029-36386103)
chr4 (90-166)||(53320718-53320794)
[»] chr2 (3 HSPs)
chr2 (21-164)||(20267165-20267308)
chr2 (21-164)||(20268915-20269058)
chr2 (21-164)||(33361047-33361190)
[»] chr3 (10 HSPs)
chr3 (21-165)||(44321483-44321626)
chr3 (22-164)||(23514412-23514554)
chr3 (54-164)||(23513688-23513798)
chr3 (36-164)||(16436524-16436652)
chr3 (100-164)||(8923631-8923695)
chr3 (64-132)||(54706952-54707020)
chr3 (100-164)||(41326544-41326608)
chr3 (100-165)||(8922883-8922948)
chr3 (100-164)||(41325822-41325886)
chr3 (100-164)||(50107568-50107632)
[»] chr7 (8 HSPs)
chr7 (21-159)||(45431064-45431202)
chr7 (35-165)||(45431753-45431883)
chr7 (54-164)||(32249345-32249455)
chr7 (77-154)||(22492483-22492560)
chr7 (35-87)||(42404634-42404686)
chr7 (100-165)||(23752803-23752868)
chr7 (64-132)||(32492591-32492659)
chr7 (100-164)||(48204147-48204211)
[»] chr8 (3 HSPs)
chr8 (21-164)||(17626274-17626416)
chr8 (64-165)||(17625633-17625734)
chr8 (100-164)||(38443034-38443098)


Alignment Details
Target: chr5 (Bit Score: 200; Significance: 1e-109; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 165 - 368
Target Start/End: Complemental strand, 30866878 - 30866675
Alignment:
Q  165 gggtccatgattccgtattaaaattcaaaattgtggtcttgtttggaagtggttggtgggtctatattacaaaaacaaacaaaacattttaaattatagt 264  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30866878 gggtccatgattccgtattaaaattcaaaattgtggtcttgtttggaagtggttggtgggtctatattacaaaaacaaacaaaacattttaaattatagt 30866779  T
Q  265 tatgggttattttgtttcatgattatacaaatgaataacataaactaatattgtatctagaatgtaagaaacggttggctggtggtcgttttcaagctta 364  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30866778 tatgggttattttatttcatgattatacaaatgaataacataaactaatattgtatctagaatgtaagaaacggttggctggtggtcgttttcaagctta 30866679  T
Q  365 ggta 368  Q
    ||||    
T  30866678 ggta 30866675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 143; E-Value: 6e-75
Query Start/End: Original strand, 213 - 363
Target Start/End: Original strand, 31194267 - 31194417
Alignment:
Q  213 gtggttggtgggtctatattacaaaaacaaacaaaacattttaaattatagttatgggttattttgtttcatgattatacaaatgaataacataaactaa 312  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||    
T  31194267 gtggttggtgggtctatattacaaaaacaaacaaaacattttaaattatagttatgggttattttatatcatgattatacaaatgaataacataaactaa 31194366  T
Q  313 tattgtatctagaatgtaagaaacggttggctggtggtcgttttcaagctt 363  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31194367 tattgtatctagaatgtaagaaacggttggctggtggtcgttttcaagctt 31194417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 21 - 164
Target Start/End: Original strand, 129280 - 129423
Alignment:
Q  21 gtgtttctagaattaatcacatgtgtgtttgtttatctttccttttttaatttcaaccgttggatatccttttaacacgtgtcacacatccatgaagata 120  Q
    ||||||||| ||  ||||||||||||||||||||||  ||   ||||| ||||||||||||||||||   | || |||||||||||||||||||| ||||    
T  129280 gtgtttctaaaagcaatcacatgtgtgtttgtttattgttgtcttttttatttcaaccgttggatattagtatatcacgtgtcacacatccatgatgata 129379  T
Q  121 aatgggataaatcaagcaaagccaaatggagcaaagatggactc 164  Q
    |||| | |||||   |||||| ||||||||||||| ||||||||    
T  129380 aatgaggtaaatggtgcaaagacaaatggagcaaatatggactc 129423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 165 - 222
Target Start/End: Original strand, 31193908 - 31193965
Alignment:
Q  165 gggtccatgattccgtattaaaattcaaaattgtggtcttgtttggaagtggttggtg 222  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  31193908 gggtccatgattccgtattaaaattcaaaattgtggtcttgtttggaaggggttggtg 31193965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 64 - 162
Target Start/End: Complemental strand, 128761 - 128663
Alignment:
Q  64 tttttaatttcaaccgttggatatccttttaacacgtgtcacacatccatgaagataaatgggataaatcaagcaaagccaaatggagcaaagatggac 162  Q
    |||| |||||||||| || ||||| ||||| ||||||||| |||||| |||||| ||||||| ||||||   ||||  | |||||||||||||||||||    
T  128761 ttttaaatttcaaccattcgatattcttttgacacgtgtcgcacatctatgaaggtaaatggaataaatggtgcaagcctaaatggagcaaagatggac 128663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 100 - 165
Target Start/End: Complemental strand, 31600512 - 31600447
Alignment:
Q  100 tgtcacacatccatgaagataaatgggataaatcaagcaaagccaaatggagcaaagatggactcg 165  Q
    |||||||||||||||| |||||||||| |||||  |||||  | ||||||||||  ||||||||||    
T  31600512 tgtcacacatccatgatgataaatggggtaaatggagcaagtctaaatggagcatggatggactcg 31600447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 400 - 436
Target Start/End: Complemental strand, 30866682 - 30866646
Alignment:
Q  400 cttaggtagtggttactaaaataaaatatgagcagca 436  Q
    ||||||||||||||||| ||| |||||||||||||||    
T  30866682 cttaggtagtggttactcaaacaaaatatgagcagca 30866646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 113; Significance: 5e-57; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 20 - 164
Target Start/End: Original strand, 49400211 - 49400355
Alignment:
Q  20 cgtgtttctagaattaatcacatgtgtgtttgtttatctttccttttttaatttcaaccgttggatatccttttaacacgtgtcacacatccatgaagat 119  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||| ||||||| |    
T  49400211 cgtgtttctagaattaatcacatgcgtgtttgtttatctttccttttttaatttcaaccgttggatattcttttaacatgtgtcacacatgcatgaaggt 49400310  T
Q  120 aaatgggataaatcaagcaaagccaaatggagcaaagatggactc 164  Q
    |||||||||||||  ||||||| ||||||||||||||||||||||    
T  49400311 aaatgggataaattgagcaaaggcaaatggagcaaagatggactc 49400355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 54 - 161
Target Start/End: Complemental strand, 49399656 - 49399549
Alignment:
Q  54 tatctttccttttttaatttcaaccgttggatatccttttaacacgtgtcacacatccatgaagataaatgggataaatcaagcaaagccaaatggagca 153  Q
    ||||||||| ||||||||||||||| |||||||| ||||||||||||||||||||||||| ||| |||||||| |||||  ||||||| |||||||||||    
T  49399656 tatctttccctttttaatttcaaccattggatattcttttaacacgtgtcacacatccatcaaggtaaatggggtaaattgagcaaaggcaaatggagca 49399557  T
Q  154 aagatgga 161  Q
    ||||||||    
T  49399556 aagatgga 49399549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 36 - 164
Target Start/End: Complemental strand, 27890696 - 27890568
Alignment:
Q  36 atcacatgtgtgtttgtttatctttccttttttaatttcaaccgttggatatccttttaacacgtgtcacacatccatgaagataaatgggataaatcaa 135  Q
    ||||||||||| |||||||||  ||   |||||||||||||||||| ||||   ||||  ||| |||||||||||||||| | ||||| ||||||||  |    
T  27890696 atcacatgtgtatttgtttattattgtctttttaatttcaaccgtttgatactattttgccacatgtcacacatccatgatggtaaataggataaattga 27890597  T
Q  136 gcaaagccaaatggagcaaagatggactc 164  Q
    |||||| ||||||||||||||||||||||    
T  27890596 gcaaaggcaaatggagcaaagatggactc 27890568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 36 - 164
Target Start/End: Original strand, 27891227 - 27891355
Alignment:
Q  36 atcacatgtgtgtttgtttatctttccttttttaatttcaaccgttggatatccttttaacacgtgtcacacatccatgaagataaatgggataaatcaa 135  Q
    |||||||||||||||||||||  || |  |||||||||||| |||||||||   ||||  ||| ||||| |||||||||  | ||||||||||||||  |    
T  27891227 atcacatgtgtgtttgtttattattgcccttttaatttcaatcgttggatactattttgccacatgtcagacatccatgttggtaaatgggataaattga 27891326  T
Q  136 gcaaagccaaatggagcaaagatggactc 164  Q
    | ||||  |||||||||||||||||||||    
T  27891327 gtaaagataaatggagcaaagatggactc 27891355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 100 - 165
Target Start/End: Complemental strand, 49385149 - 49385084
Alignment:
Q  100 tgtcacacatccatgaagataaatgggataaatcaagcaaagccaaatggagcaaagatggactcg 165  Q
    ||||||||||||||||   |||||||| ||||| | |||||   ||||||||||||||||||||||    
T  49385149 tgtcacacatccatgattgtaaatggggtaaatgatgcaaacttaaatggagcaaagatggactcg 49385084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 100 - 164
Target Start/End: Complemental strand, 1764580 - 1764516
Alignment:
Q  100 tgtcacacatccatgaagataaatgggataaatcaagcaaagccaaatggagcaaagatggactc 164  Q
    ||||| |||||||||| ||||||| || |||||  ||||||   |||||||||||||||||||||    
T  1764580 tgtcatacatccatgatgataaatagggtaaattgagcaaacttaaatggagcaaagatggactc 1764516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 94; Significance: 1e-45; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 12 - 165
Target Start/End: Complemental strand, 52237786 - 52237634
Alignment:
Q  12 acagagaccgtgtttctagaattaatcacatgtgtgtttgtttatctttccttttttaatttcaaccgttggatatccttttaacacgtgtcacacatcc 111  Q
    |||||||  ||||||||| || |||||||||||||||||||||||||||||||||| ||||||||| ||||||||| ||||||||| |||||||||||||    
T  52237786 acagagattgtgtttctaaaagtaatcacatgtgtgtttgtttatctttccttttt-aatttcaactgttggatattcttttaacatgtgtcacacatcc 52237688  T
Q  112 atgaagataaatgggataaatcaagcaaagccaaatggagcaaagatggactcg 165  Q
    |||||| |||||||| |||||  ||||||| |||||||||||||||| ||||||    
T  52237687 atgaaggtaaatggggtaaattgagcaaaggcaaatggagcaaagatagactcg 52237634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 56 - 164
Target Start/End: Original strand, 52238270 - 52238378
Alignment:
Q  56 tctttccttttttaatttcaaccgttggatatccttttaacacgtgtcacacatccatgaagataaatgggataaatcaagcaaagccaaatggagcaaa 155  Q
    ||||||| ||||||||||||||| |||||||| ||||||||||||||||||||||||||||| |||||||| |||||  ||||||| |||||| ||||||    
T  52238270 tctttccctttttaatttcaaccattggatattcttttaacacgtgtcacacatccatgaaggtaaatggggtaaattgagcaaaggcaaatgaagcaaa 52238369  T
Q  156 gatggactc 164  Q
    |||||||||    
T  52238370 gatggactc 52238378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 54 - 162
Target Start/End: Complemental strand, 53327566 - 53327458
Alignment:
Q  54 tatctttccttttttaatttcaaccgttggatatccttttaacacgtgtcacacatccatgaagataaatgggataaatcaagcaaagccaaatggagca 153  Q
    ||||||||| ||||||||||||||| |||||||| |||||||||  |||||||||||| ||||| |||||| ||||||| ||||| | | ||||||||||    
T  53327566 tatctttccctttttaatttcaaccattggatattcttttaacaaatgtcacacatccgtgaaggtaaatgagataaatgaagcatatctaaatggagca 53327467  T
Q  154 aagatggac 162  Q
    |||||||||    
T  53327466 aagatggac 53327458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 54 - 158
Target Start/End: Original strand, 48957414 - 48957518
Alignment:
Q  54 tatctttccttttttaatttcaaccgttggatatccttttaacacgtgtcacacatccatgaagataaatgggataaatcaagcaaagccaaatggagca 153  Q
    ||||||||| ||||||||||||||| |||||||| |||||||||| |||| ||||||| ||||| |||||||| |||||  |||| | | ||||| ||||    
T  48957414 tatctttccctttttaatttcaaccattggatattcttttaacacatgtcgcacatccgtgaaggtaaatgggttaaatggagcatatctaaatgaagca 48957513  T
Q  154 aagat 158  Q
    |||||    
T  48957514 aagat 48957518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 36 - 164
Target Start/End: Complemental strand, 55633682 - 55633554
Alignment:
Q  36 atcacatgtgtgtttgtttatctttccttttttaatttcaaccgttggatatccttttaacacgtgtcacacatccatgaagataaatgggataaatcaa 135  Q
    ||||||||||| |||||||||  ||   |||||||||||||||||| ||||   ||||  ||  |||||||||||||||| | ||||||||||||||  |    
T  55633682 atcacatgtgtatttgtttattattgtctttttaatttcaaccgtttgatactattttgccatatgtcacacatccatgatggtaaatgggataaattga 55633583  T
Q  136 gcaaagccaaatggagcaaagatggactc 164  Q
    |||||| |||| |||||||||||||||||    
T  55633582 gcaaaggcaaacggagcaaagatggactc 55633554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 100 - 165
Target Start/End: Original strand, 5469968 - 5470033
Alignment:
Q  100 tgtcacacatccatgaagataaatgggataaatcaagcaaagccaaatggagcaaagatggactcg 165  Q
    |||||||||||||| | | ||||||||||||||  ||||||   ||||||||||||||||||||||    
T  5469968 tgtcacacatccataatggtaaatgggataaattgagcaaacttaaatggagcaaagatggactcg 5470033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 100 - 165
Target Start/End: Complemental strand, 48956701 - 48956636
Alignment:
Q  100 tgtcacacatccatgaagataaatgggataaatcaagcaaagccaaatggagcaaagatggactcg 165  Q
    ||||||||||||||||||||||||||| ||||| || || | | |||||||  |||||||||||||    
T  48956701 tgtcacacatccatgaagataaatggggtaaattaaacatatctaaatggaataaagatggactcg 48956636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 21 - 109
Target Start/End: Complemental strand, 53320149 - 53320061
Alignment:
Q  21 gtgtttctagaattaatcacatgtgtgtttgtttatctttccttttttaatttcaaccgttggatatccttttaacacgtgtcacacat 109  Q
    ||||||||| ||  ||||||||||||||||||||||  ||   ||||| |||||||| |||||||||  || || ||||||||||||||    
T  53320149 gtgtttctaaaagcaatcacatgtgtgtttgtttattgttgtcttttttatttcaactgttggatattattataccacgtgtcacacat 53320061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 90 - 164
Target Start/End: Original strand, 36386029 - 36386103
Alignment:
Q  90 ttttaacacgtgtcacacatccatgaagataaatgggataaatcaagcaaagccaaatggagcaaagatggactc 164  Q
    |||| |||| ||||||||||||||||  | ||||||| |||||  |||||||  |||||||||||||||| ||||    
T  36386029 tttttacacatgtcacacatccatgactagaaatggggtaaattgagcaaagtgaaatggagcaaagatgcactc 36386103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 90 - 166
Target Start/End: Original strand, 53320718 - 53320794
Alignment:
Q  90 ttttaacacgtgtcacacatccatgaagataaatgggataaatcaagcaaagccaaatggagcaaagatggactcgg 166  Q
    |||| ||||||||| ||||||||||||| |||||| | ||||| |  |||  | ||| |||||||||||||||||||    
T  53320718 tttttacacgtgtcgcacatccatgaaggtaaatgaggtaaatgatccaagcctaaaaggagcaaagatggactcgg 53320794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 92; Significance: 2e-44; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 21 - 164
Target Start/End: Complemental strand, 20267308 - 20267165
Alignment:
Q  21 gtgtttctagaattaatcacatgtgtgtttgtttatctttccttttttaatttcaaccgttggatatccttttaacacgtgtcacacatccatgaagata 120  Q
    ||||||||| ||  ||||| |||||||||||||||||||||| |||||||||||||||||||||||| ||||||||| ||||| ||||||||||||||||    
T  20267308 gtgtttctaaaagcaatcatatgtgtgtttgtttatctttccctttttaatttcaaccgttggatattcttttaacatgtgtcgcacatccatgaagata 20267209  T
Q  121 aatgggataaatcaagcaaagccaaatggagcaaagatggactc 164  Q
    |||| |||||||  |||||||  |||||||||||||||||||||    
T  20267208 aatgagataaattgagcaaaggtaaatggagcaaagatggactc 20267165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 21 - 164
Target Start/End: Original strand, 20268915 - 20269058
Alignment:
Q  21 gtgtttctagaattaatcacatgtgtgtttgtttatctttccttttttaatttcaaccgttggatatccttttaacacgtgtcacacatccatgaagata 120  Q
    ||||||||| ||  ||||| |||||||||||||||||||||| |||||||||||||||||||||||| ||||||||| ||||| ||||||||||||||||    
T  20268915 gtgtttctaaaagcaatcatatgtgtgtttgtttatctttccctttttaatttcaaccgttggatattcttttaacatgtgtcgcacatccatgaagata 20269014  T
Q  121 aatgggataaatcaagcaaagccaaatggagcaaagatggactc 164  Q
    |||| |||||||  |||||||  |||||||||||||||||||||    
T  20269015 aatgagataaattgagcaaaggtaaatggagcaaagatggactc 20269058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 21 - 164
Target Start/End: Complemental strand, 33361190 - 33361047
Alignment:
Q  21 gtgtttctagaattaatcacatgtgtgtttgtttatctttccttttttaatttcaaccgttggatatccttttaacacgtgtcacacatccatgaagata 120  Q
    ||||||||| ||  |||| ||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||| ||||||||||||||||||| ||    
T  33361190 gtgtttctaaaaccaatcgcatgtgtgtttgtttatctttccctttttaatttcaaccgttggatattcttttaacatgtgtcacacatccatgaaggta 33361091  T
Q  121 aatgggataaatcaagcaaagccaaatggagcaaagatggactc 164  Q
    ||||| ||||||  |||||||  |||||||||||||||||||||    
T  33361090 aatggtataaattgagcaaaggtaaatggagcaaagatggactc 33361047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 77; Significance: 1e-35; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 21 - 165
Target Start/End: Original strand, 44321483 - 44321626
Alignment:
Q  21 gtgtttctagaattaatcacatgtgtgtttgtttatctttccttttttaatttcaaccgttggatatccttttaacacgtgtcacacatccatgaagata 120  Q
    ||||||||| ||  ||| |||||||||||||||||||||| | ||||||||||||||| ||| |||| |||||||||||||||||||||| |||||| ||    
T  44321483 gtgtttctaaaagcaatgacatgtgtgtttgtttatcttttcctttttaatttcaaccattgaatattcttttaacacgtgtcacacatcaatgaaggta 44321582  T
Q  121 aatgggataaatcaagcaaagccaaatggagcaaagatggactcg 165  Q
    |||||| |||||  ||||||  |||||||||||||||||||||||    
T  44321583 aatggg-taaattgagcaaaagcaaatggagcaaagatggactcg 44321626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 22 - 164
Target Start/End: Original strand, 23514412 - 23514554
Alignment:
Q  22 tgtttctagaattaatcacatgtgtgtttgtttatctttccttttttaatttcaaccgttggatatccttttaacacgtgtcacacatccatgaagataa 121  Q
    |||||||| ||  ||||||||||||||||||||||  || | ||||| |||||||||||| |||||  ||||  ||| ||||||||||||||||   |||    
T  23514412 tgtttctaaaagcaatcacatgtgtgtttgtttattgttgccttttttatttcaaccgttagatatttttttgccacatgtcacacatccatgatagtaa 23514511  T
Q  122 atgggataaatcaagcaaagccaaatggagcaaagatggactc 164  Q
    ||||| |||||  ||||||| ||||||||||||||||||||||    
T  23514512 atggggtaaattgagcaaaggcaaatggagcaaagatggactc 23514554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 54 - 164
Target Start/End: Complemental strand, 23513798 - 23513688
Alignment:
Q  54 tatctttccttttttaatttcaaccgttggatatccttttaacacgtgtcacacatccatgaagataaatgggataaatcaagcaaagccaaatggagca 153  Q
    ||||| ||| ||||||||||||||| || ||||| | ||| ||||||||||  ||||||||| ||||||||||||||||  |||||||  ||||||||||    
T  23513798 tatctctccctttttaatttcaaccattagatattcctttgacacgtgtcatgcatccatgatgataaatgggataaattgagcaaagataaatggagca 23513699  T
Q  154 aagatggactc 164  Q
    |||||||||||    
T  23513698 aagatggactc 23513688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 36 - 164
Target Start/End: Complemental strand, 16436652 - 16436524
Alignment:
Q  36 atcacatgtgtgtttgtttatctttccttttttaatttcaaccgttggatatccttttaacacgtgtcacacatccatgaagataaatgggataaatcaa 135  Q
    ||||||||||| |||||||||  ||   |||||||||||||||||| ||||   ||||  ||  |||||||||||||||| | ||||||||||||||  |    
T  16436652 atcacatgtgtatttgtttattattgtctttttaatttcaaccgtttgatactattttgccatatgtcacacatccatgatggtaaatgggataaattga 16436553  T
Q  136 gcaaagccaaatggagcaaagatggactc 164  Q
    |||||| |||| |||||||||||||||||    
T  16436552 gcaaaggcaaacggagcaaagatggactc 16436524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 100 - 164
Target Start/End: Original strand, 8923631 - 8923695
Alignment:
Q  100 tgtcacacatccatgaagataaatgggataaatcaagcaaagccaaatggagcaaagatggactc 164  Q
    |||||||||||||||| | |||||||| |||||  |||||| |||||||||||||||||||||||    
T  8923631 tgtcacacatccatgatggtaaatggggtaaatggagcaaacccaaatggagcaaagatggactc 8923695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 64 - 132
Target Start/End: Complemental strand, 54707020 - 54706952
Alignment:
Q  64 tttttaatttcaaccgttggatatccttttaacacgtgtcacacatccatgaagataaatgggataaat 132  Q
    ||||||||||||||||||||||||  |||| ||| |||||||||||||||||   ||||||||||||||    
T  54707020 tttttaatttcaaccgttggatattattttgacatgtgtcacacatccatgatcgtaaatgggataaat 54706952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 100 - 164
Target Start/End: Original strand, 41326544 - 41326608
Alignment:
Q  100 tgtcacacatccatgaagataaatgggataaatcaagcaaagccaaatggagcaaagatggactc 164  Q
    |||||||||||||||| | ||||| || |||||  |||||| |||||||||||||||||||||||    
T  41326544 tgtcacacatccatgatggtaaattgggtaaatggagcaaacccaaatggagcaaagatggactc 41326608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 100 - 165
Target Start/End: Complemental strand, 8922948 - 8922883
Alignment:
Q  100 tgtcacacatccatgaagataaatgggataaatcaagcaaagccaaatggagcaaagatggactcg 165  Q
    |||||||||||||||| |||||||||| |||||  |||||| | |||||||| ||||||| |||||    
T  8922948 tgtcacacatccatgatgataaatggggtaaattgagcaaacctaaatggagtaaagatgaactcg 8922883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 100 - 164
Target Start/End: Complemental strand, 41325886 - 41325822
Alignment:
Q  100 tgtcacacatccatgaagataaatgggataaatcaagcaaagccaaatggagcaaagatggactc 164  Q
    |||||||||||||||| |||||||||| |||||  |||||| | |||||||| ||||||| ||||    
T  41325886 tgtcacacatccatgatgataaatggggtaaattgagcaaacctaaatggagtaaagatgaactc 41325822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 100 - 164
Target Start/End: Complemental strand, 50107632 - 50107568
Alignment:
Q  100 tgtcacacatccatgaagataaatgggataaatcaagcaaagccaaatggagcaaagatggactc 164  Q
    |||||||||||||||| |||||||||| |||||  |||||| | ||||| || ||||||| ||||    
T  50107632 tgtcacacatccatgatgataaatggggtaaattgagcaaacctaaatgtagtaaagatgaactc 50107568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 75; Significance: 2e-34; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 21 - 159
Target Start/End: Complemental strand, 45431202 - 45431064
Alignment:
Q  21 gtgtttctagaattaatcacatgtgtgtttgtttatctttccttttttaatttcaaccgttggatatccttttaacacgtgtcacacatccatgaagata 120  Q
    ||||||||| ||  ||||||||| ||||||||||||  || | ||||| ||||||||||||||||||  |||||||||||||||||||||||||| | ||    
T  45431202 gtgtttctaaaagcaatcacatgggtgtttgtttattgttgccttttttatttcaaccgttggatattattttaacacgtgtcacacatccatgatggta 45431103  T
Q  121 aatgggataaatcaagcaaagccaaatggagcaaagatg 159  Q
    ||||||||||||  ||||||| |||||||||||||||||    
T  45431102 aatgggataaattgagcaaagacaaatggagcaaagatg 45431064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 35 - 165
Target Start/End: Original strand, 45431753 - 45431883
Alignment:
Q  35 aatcacatgtgtgtttgtttatctttccttttttaatttcaaccgttggatatccttttaacacgtgtcacacatccatgaagataaatgggataaatca 134  Q
    ||||||||||||||||||||||  || | ||||| ||||| ||| ||||||||  ||||||||||| |||||||||||||| | |||||| | |||||      
T  45431753 aatcacatgtgtgtttgtttattgttgccttttttatttcgaccattggatattattttaacacgtatcacacatccatgatggtaaatgagttaaatgg 45431852  T
Q  135 agcaaagccaaatggagcaaagatggactcg 165  Q
    ||||||| |||||||||||||||| ||||||    
T  45431853 agcaaaggcaaatggagcaaagattgactcg 45431883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 54 - 164
Target Start/End: Complemental strand, 32249455 - 32249345
Alignment:
Q  54 tatctttccttttttaatttcaaccgttggatatccttttaacacgtgtcacacatccatgaagataaatgggataaatcaagcaaagccaaatggagca 153  Q
    ||||||| | ||||||||||||||| |||||||| ||||||||| |||||||||||| |||||   ||||||| |||||  | ||||| |||||||| ||    
T  32249455 tatctttacctttttaatttcaaccattggatattcttttaacaagtgtcacacatctatgaaaggaaatggggtaaattgaacaaaggcaaatggaaca 32249356  T
Q  154 aagatggactc 164  Q
    |||||||||||    
T  32249355 aagatggactc 32249345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 77 - 154
Target Start/End: Original strand, 22492483 - 22492560
Alignment:
Q  77 ccgttggatatccttttaacacgtgtcacacatccatgaagataaatgggataaatcaagcaaagccaaatggagcaa 154  Q
    |||||||||||  ||||| |||||||||||||||||||| | ||||||||||||||  ||||||| ||||||||||||    
T  22492483 ccgttggatattattttagcacgtgtcacacatccatgatggtaaatgggataaatggagcaaaggcaaatggagcaa 22492560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 35 - 87
Target Start/End: Complemental strand, 42404686 - 42404634
Alignment:
Q  35 aatcacatgtgtgtttgtttatctttccttttttaatttcaaccgttggatat 87  Q
    |||||||||||||||| ||||| ||||| |||||||||||| |||||||||||    
T  42404686 aatcacatgtgtgtttctttatttttccctttttaatttcagccgttggatat 42404634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 100 - 165
Target Start/End: Original strand, 23752803 - 23752868
Alignment:
Q  100 tgtcacacatccatgaagataaatgggataaatcaagcaaagccaaatggagcaaagatggactcg 165  Q
    |||||||||||||||| | ||||||||||||||  |||||||  ||| | |||||||||| |||||    
T  23752803 tgtcacacatccatgatggtaaatgggataaattgagcaaaggtaaaagaagcaaagatgcactcg 23752868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 64 - 132
Target Start/End: Complemental strand, 32492659 - 32492591
Alignment:
Q  64 tttttaatttcaaccgttggatatccttttaacacgtgtcacacatccatgaagataaatgggataaat 132  Q
    ||||||| ||||||||||||||||  ||||  ||| |||||||||||||| ||| | |||||| |||||    
T  32492659 tttttaaattcaaccgttggatattattttgccacatgtcacacatccataaaggtcaatggggtaaat 32492591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 100 - 164
Target Start/End: Complemental strand, 48204211 - 48204147
Alignment:
Q  100 tgtcacacatccatgaagataaatgggataaatcaagcaaagccaaatggagcaaagatggactc 164  Q
    ||||| |||||||||| | ||||| ||||||||  ||||||   |||||||||||||||||||||    
T  48204211 tgtcatacatccatgatggtaaataggataaatggagcaaacttaaatggagcaaagatggactc 48204147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 56; Significance: 5e-23; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 21 - 164
Target Start/End: Original strand, 17626274 - 17626416
Alignment:
Q  21 gtgtttctagaattaatcacatgtgtgtttgtttatctttccttttttaatttcaaccgttggatatccttttaacacgtgtcacacatccatgaagata 120  Q
    ||||||||| ||  ||||||||||||||||||||||  ||   ||||| ||||||||||||||||||  || || |||||||||||||||||||| | ||    
T  17626274 gtgtttctaaaagcaatcacatgtgtgtttgtttattgttgtcttttttatttcaaccgttggatattattataccacgtgtcacacatccatgatggta 17626373  T
Q  121 aatgggataaatcaagcaaagccaaatggagcaaagatggactc 164  Q
    |||||| |||||   |||||| ||||||||||||| ||||||||    
T  17626374 aatggggtaaatggtgcaaagacaaatggagcaaa-atggactc 17626416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 64 - 165
Target Start/End: Complemental strand, 17625734 - 17625633
Alignment:
Q  64 tttttaatttcaaccgttggatatccttttaacacgtgtcacacatccatgaagataaatgggataaatcaagcaaagccaaatggagcaaagatggact 163  Q
    ||||||||||||||  |||||||| ||||| ||||||||| ||||||||||||| |||||||| |||||   ||||  | ||||||||||||||||||||    
T  17625734 tttttaatttcaactattggatattcttttgacacgtgtcgcacatccatgaaggtaaatggggtaaatggtgcaagcctaaatggagcaaagatggact 17625635  T
Q  164 cg 165  Q
    ||    
T  17625634 cg 17625633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 100 - 164
Target Start/End: Complemental strand, 38443098 - 38443034
Alignment:
Q  100 tgtcacacatccatgaagataaatgggataaatcaagcaaagccaaatggagcaaagatggactc 164  Q
    |||||||||||||||| | |||||||| |||||  |||| |   |||||||||||||||||||||    
T  38443098 tgtcacacatccatgatggtaaatggggtaaatggagcagacttaaatggagcaaagatggactc 38443034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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