View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3743_high_12 (Length: 427)
Name: NF3743_high_12
Description: NF3743
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3743_high_12 |
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Alignment Details
Target: chr5 (Bit Score: 351; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 12 - 412
Target Start/End: Original strand, 4838899 - 4839300
Alignment:
| Q |
12 |
acagacacattattaagaaggtgagaaaagttttaaacttcaacctatgatacaatttaccacatacaatctgtgtcttaagtatatttagttaatttta |
111 |
Q |
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| T |
4838899 |
acagacacattattaagaaggtgagaaaagttt-aaacttcaacctatgatacaatttaccacatacaatctgtgtcttaaatatatttagttaatttta |
4838997 |
T |
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| Q |
112 |
ttataacagcaacgagttttaaaagagaaaagaaactataaacacgaacaatagacaaatgaagcaacaaattttatgtagtacttacgtgcatggaaga |
211 |
Q |
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| T |
4838998 |
ttataacagcaacgagttttaaaagagaaaagaaactataaacacaaacaatagacaaatgaagcaacaaattttatgtagtacttacgtgcatggaaga |
4839097 |
T |
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| Q |
212 |
gtatatttca-atgagaaataatactttgactttaaaattttggtgtaaaatacaattccttaagtttttagtatgtgtatttttaaaatacttttaagt |
310 |
Q |
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| T |
4839098 |
gtatattcaatatgagaaataatactttgactttaaaattttggtgtaaaatacaattcctttagtttttagtatgtgtatttttaaaatacttttaagt |
4839197 |
T |
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| Q |
311 |
tttagaagataaaaa-gtaagaaagaaatagaggtaaatgtgtagaatatcatatgcctaattggaaaatgttttgtgtacatctcatgaggggtgtaca |
409 |
Q |
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| T |
4839198 |
tttagaagataaaaaggtaagaaagaaatagaggtaaatgtgtagaatatcatatacctaattggaaaatgttttgtgtacatctcatgatgggtgtaca |
4839297 |
T |
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| Q |
410 |
tgc |
412 |
Q |
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| T |
4839298 |
tgc |
4839300 |
T |
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Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 283 - 341
Target Start/End: Original strand, 34950899 - 34950957
Alignment:
| Q |
283 |
tatgtgtatttttaaaatacttttaagttttagaagataaaaagtaagaaagaaataga |
341 |
Q |
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| T |
34950899 |
tatgtgtattttttaaatacttttaagttgtagaaaataaaatataagaaataaataga |
34950957 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 285 - 353
Target Start/End: Complemental strand, 33844212 - 33844144
Alignment:
| Q |
285 |
tgtgtatttttaaaatacttttaagttttagaagataaaaagtaagaaagaaatagaggtaaatgtgta |
353 |
Q |
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| T |
33844212 |
tgtgtatttttgaaatgcatttaagttgtaggagataaatagtaagagagagatagagataaacgtgta |
33844144 |
T |
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