View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3743_high_13 (Length: 411)
Name: NF3743_high_13
Description: NF3743
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3743_high_13 |
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Alignment Details
Target: chr1 (Bit Score: 361; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 1 - 378
Target Start/End: Complemental strand, 41606721 - 41606342
Alignment:
| Q |
1 |
attcctatgaccctatgatggttggtgatgttttctaccctcgtagtaacttcactcaccaccactatgactattcctccactgttaaccctacaactac |
100 |
Q |
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| T |
41606721 |
attcctatgaccctatgatggttggtgatgttttctaccctcgtagtaacttcactcaccaccactatgactattcctccactgttaaccctacaactac |
41606622 |
T |
|
| Q |
101 |
cactatagctgctgcttctaattcagatcatgctactgcttctactgcattctgtgtaggtttagaaacttctgataaaggatggcttggtaactttgat |
200 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41606621 |
cactatagctgctgcttcaaattcagatcatgctactgcttctactgcattctgtgtaggtttagaaacttctgataaaggatggcttggtaactttgat |
41606522 |
T |
|
| Q |
201 |
tcttgtaacaacagatggcctagacaagagactctttctcttctagaaatcagatctcgtcttgattctaagttcagagagaataatcagaaagcaccct |
300 |
Q |
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| T |
41606521 |
tcttgtaacaacagatggcccagacaagagactctttctcttctagaaatcagatctcgtcttgattctaagttcagagagaataatcagaaagcaccct |
41606422 |
T |
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| Q |
301 |
tgtggaatgaaatttctaggtatatgttagtgtcttaa--ctcttaattaattactggtttaccaagctttttatttcac |
378 |
Q |
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| T |
41606421 |
tgtggaatgaaatttctaggtatatgttagtgtcttaactctcttaattaattactggtttaccaagctttttatttcac |
41606342 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 213 - 265
Target Start/End: Original strand, 26598001 - 26598053
Alignment:
| Q |
213 |
agatggcctagacaagagactctttctcttctagaaatcagatctcgtcttga |
265 |
Q |
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|||||||| |||||||| |||||| ||||||| |||||||||||||||||||| |
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| T |
26598001 |
agatggccaagacaagaaactcttactcttcttgaaatcagatctcgtcttga |
26598053 |
T |
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