View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3743_high_14 (Length: 404)
Name: NF3743_high_14
Description: NF3743
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3743_high_14 |
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Alignment Details
Target: chr5 (Bit Score: 262; Significance: 1e-146; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 20 - 296
Target Start/End: Complemental strand, 13788307 - 13788028
Alignment:
| Q |
20 |
cctacaaagaggacccatatattatggacaagggcaatgtaatgtatatctagccatgaagatcctgcaaacaaaaagagaacacacaacattccatttt |
119 |
Q |
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| T |
13788307 |
cctacaaagaggacccatatattatggacaagggcaatgcaatgtatatctagccatgaagatcctgcaaacaaaaagagaacacacaacattccatttt |
13788208 |
T |
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| Q |
120 |
tacatcaataatgcgtatctcacattttccataacttgagtacttcaactaggatatagt---agtattactcgtgcaatatgcatggaataaaatatac |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
13788207 |
tacatcaataatgcgtatctcacattttccataacttgagtacttcaactaggatatagtagtagtattactcgtgcaatatgcatggaataaaatatac |
13788108 |
T |
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| Q |
217 |
taaaataaaatccatttcagtcatcatcactagtgtgtaaaagataataaattcaaaactgaatagtttttagtcatgta |
296 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13788107 |
taaaataaaatccatttcagtcatcatcactagtgtgtaaaagataataaattcaaaactgaatagtttttagtcatgta |
13788028 |
T |
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