View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3743_high_16 (Length: 389)
Name: NF3743_high_16
Description: NF3743
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3743_high_16 |
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Alignment Details
Target: chr3 (Bit Score: 371; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 1 - 383
Target Start/End: Original strand, 9834700 - 9835082
Alignment:
| Q |
1 |
cattgcagctgttgtaggtcgatgttagtttgtttggattggcgtcggaaaatgccaaacgctcaacaactattttttgttttggcgctgacatgctttg |
100 |
Q |
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| T |
9834700 |
cattgcagctgttgtaggtcgatgttagtttgtttggattggcgtcggaaaatgccaaacgctcaacaactattttttgttttggcgctgacatgctttg |
9834799 |
T |
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| Q |
101 |
gaaaattgctagtgcgctaataataaagcaacacactggtgatttgtagtcgccatataatgcagttttcgtgactgctgtattgtggctgatcacatta |
200 |
Q |
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| T |
9834800 |
gaaaattgctagtgcgctaataataaagcaacacactggtgatttgtagtcgcaatataatgcagtttttgtgactgctgtattgtggctgatcacatta |
9834899 |
T |
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| Q |
201 |
cgaggtctgcaatttcaaacactgtttggtagaccggtgctaactacaaagtgttggttaagttagagcatccaaaaatctggtttattccccccttgtt |
300 |
Q |
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| T |
9834900 |
cgaggtctgcaatttcaaacactgtttggtagaccggtgctaactacaaagtgttggttaagttagagcatccaaaaatctggtttattccccccttgtt |
9834999 |
T |
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| Q |
301 |
tcttttttcatcttaaattgccacataatttgttgtttgattatgtgtcagaattcccaaaaacaaagaagatccatatttgc |
383 |
Q |
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| T |
9835000 |
tctttttacatcttaaattgccacataatttgttgtttgattatgtgtcagaattcccaaaaacaaagaagatccatatttgc |
9835082 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 1 - 383
Target Start/End: Original strand, 9845576 - 9845960
Alignment:
| Q |
1 |
cattgcagctgttgtaggtcgatgttagtttgtttggattggcgtcggaaaatgccaaacgctcaacaactattttttgttttggcgctgacatgctttg |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
9845576 |
cattgcagctgttgtaggtcgatgttagtttgtttggattggcgtcggaaaatgccaaacgctcaacaactattttttgttttggcgctgacatgctatg |
9845675 |
T |
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| Q |
101 |
gaaaattgctagtgcgctaataataaagcaacac--actggtgatttgtagtcgccatataatgcagttttcgtgactgctgtattgtggctgatcacat |
198 |
Q |
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| T |
9845676 |
gaaaattgctagtgcgctaataataaagcaacacacactggtgatttgtagtcgcaatataatgcagtttttgtgactgctgtattgtggctgatcacat |
9845775 |
T |
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| Q |
199 |
tacgaggtctgcaatttcaaacactgtttggtagaccggtgctaactacaaagtgttggttaagttagagcatccaaaaatctggtttattccccccttg |
298 |
Q |
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| T |
9845776 |
tacgaggtctgcaatttcaaacactgtttggtagaccggtgctaactacaaagtgttggttaagttagagcatccaaaaatctggtttattccccccttg |
9845875 |
T |
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| Q |
299 |
tttcttttttcatcttaaattgccacataatttgttgtttgattatgtgtcagaattcccaaaaacaaagaagatccatatttgc |
383 |
Q |
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| T |
9845876 |
tttcttttttcatcttaaattgccacataatttgttgtttgattatgtgtcagaattcccaaaaacaaagaagatccatatttgc |
9845960 |
T |
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