View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3743_high_17 (Length: 377)
Name: NF3743_high_17
Description: NF3743
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3743_high_17 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 355; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 19 - 377
Target Start/End: Original strand, 28526135 - 28526493
Alignment:
| Q |
19 |
ttagcagctatggatcaagcagtttctgatggtgttgatgtactatcactatctttaggaagtattccaaaaccattttataatgatagtattgctatag |
118 |
Q |
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| T |
28526135 |
ttagcagctatggatcaagcagtttctgatggtgttgatgtactatcactatctttaggaagtattccaaaaccattttataatgatagtattgctatag |
28526234 |
T |
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| Q |
119 |
cttcatttggagcaacgaaaaacggtgtttttgtttcttgctcagcaggcaactcaggcccttttgcatcaacggtgggaaacggcgcaccatggatcat |
218 |
Q |
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| T |
28526235 |
cttcatttggagcaacgaaaaacggtgtttttgtttcttgctcagcaggcaactcaggcccttttgcatcaactgtgggaaacggcgcaccatggatcat |
28526334 |
T |
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| Q |
219 |
gacagttgctgctagctacattgacagaacttttccaacaaaagtaaaacttggaaactcaaaaaattttgaaggcacatctttgtaccaaggaaaaaac |
318 |
Q |
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| T |
28526335 |
gacagttgctgctagctacattgacagaacttttccaacaaaagtaaaacttggaaactcaaaaaattttgaaggcacatctttgtaccaaggaaaaaac |
28526434 |
T |
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| Q |
319 |
gaaccaaaccaacaattcccacttgtttatggaaaaacagcaggtaaaaagagagaagc |
377 |
Q |
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| T |
28526435 |
gaaccaaaccaacaattcccacttgtttatggaaaaacagcaggtaaaaagagagaagc |
28526493 |
T |
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