View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3743_high_29 (Length: 314)

Name: NF3743_high_29
Description: NF3743
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3743_high_29
NF3743_high_29
[»] chr8 (6 HSPs)
chr8 (18-188)||(43147585-43147756)
chr8 (217-309)||(43147475-43147567)
chr8 (29-78)||(43159051-43159101)
chr8 (129-188)||(3507917-3507976)
chr8 (229-285)||(26947030-26947086)
chr8 (105-188)||(26946934-26947017)
[»] chr4 (3 HSPs)
chr4 (229-285)||(4892216-4892272)
chr4 (91-187)||(3640030-3640126)
chr4 (229-283)||(4872396-4872450)
[»] chr1 (1 HSPs)
chr1 (229-285)||(32238586-32238642)
[»] chr3 (1 HSPs)
chr3 (233-285)||(12074251-12074303)
[»] scaffold0989 (2 HSPs)
scaffold0989 (115-188)||(1119-1192)
scaffold0989 (229-285)||(1205-1261)
[»] chr7 (1 HSPs)
chr7 (115-188)||(18790940-18791013)


Alignment Details
Target: chr8 (Bit Score: 164; Significance: 1e-87; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 18 - 188
Target Start/End: Complemental strand, 43147756 - 43147585
Alignment:
Q  18 caccaaagaataataaattagatcaatttgatctaccaac-accatgcttccaaagtgaggggaatattgttagaaaaggagaacgccatagtgagattt 116  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43147756 caccaaagaataataaattagatcaatttgatctaccaaccaccatgcttccaaagtgaggggaatattgttagaaaaggagaacgccatagtgagattt 43147657  T
Q  117 tgtgaggaattgaggaggagataatgtatgatagaagtacaatttctattgcttgagagaatgctttgattc 188  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43147656 tgtgaggaattgaggaggagataatgtatgatagaagtacaatttctattgcttgagagaatgctttgattc 43147585  T

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Target: chr8; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 217 - 309
Target Start/End: Complemental strand, 43147567 - 43147475
Alignment:
Q  217 cattctacatgtttgatttacaaatgacaagctctcccctttgtataggttctaagagagagttctagatcgtatcattacagaataatttac 309  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||    
T  43147567 cattctacatgtttgatttacaaatgacaagctctcccctttgtataggttctaagagagagttctagatcgtatcattacataatattttac 43147475  T

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Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 29 - 78
Target Start/End: Complemental strand, 43159101 - 43159051
Alignment:
Q  29 aataaattagatcaatttgatctaccaaca-ccatgcttccaaagtgaggg 78  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  43159101 aataaattagatcaatttgatctaccaacacccatgcttccaaagtgaggg 43159051  T

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Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 129 - 188
Target Start/End: Complemental strand, 3507976 - 3507917
Alignment:
Q  129 aggaggagataatgtatgatagaagtacaatttctattgcttgagagaatgctttgattc 188  Q
    ||||||||||||| ||||| ||||| ||||||||||||||||||||||||  ||||||||    
T  3507976 aggaggagataatatatgagagaagaacaatttctattgcttgagagaataatttgattc 3507917  T

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Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 229 - 285
Target Start/End: Original strand, 26947030 - 26947086
Alignment:
Q  229 ttgatttacaaatgacaagctctcccctttgtataggttctaagagagagttctaga 285  Q
    ||||||||| |||||||||||||||||||| |||||| || ||| ||||||||||||    
T  26947030 ttgatttactaatgacaagctctcccctttttataggctccaagggagagttctaga 26947086  T

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Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 105 - 188
Target Start/End: Original strand, 26946934 - 26947017
Alignment:
Q  105 atagtgagattttgtgaggaattgaggaggagataatgtatgatagaagtacaatttctattgcttgagagaatgctttgattc 188  Q
    ||||||||| |||||||| |||| ||||||||  ||| | ||| ||||| || |||| |||| ||||||||||| |||||||||    
T  26946934 atagtgagactttgtgagaaatttaggaggagggaatatttgagagaagaactatttttattacttgagagaatactttgattc 26947017  T

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Target: chr4 (Bit Score: 45; Significance: 1e-16; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 229 - 285
Target Start/End: Original strand, 4892216 - 4892272
Alignment:
Q  229 ttgatttacaaatgacaagctctcccctttgtataggttctaagagagagttctaga 285  Q
    |||||||||||||||||||||||||||||| |||||| |||||| ||||||||||||    
T  4892216 ttgatttacaaatgacaagctctcccctttttataggctctaagggagagttctaga 4892272  T

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Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 91 - 187
Target Start/End: Complemental strand, 3640126 - 3640030
Alignment:
Q  91 aaaaggagaacgccatagtgagattttgtgaggaattgaggaggagataatgtatgatagaagtacaatttctattgcttgagagaatgctttgatt 187  Q
    ||||||||||||  |||||||| ||||| ||| |||||||||||||| ||| |   | ||||| |||||||||||| | ||||||||||||||||||    
T  3640126 aaaaggagaacgttatagtgagcttttgggagaaattgaggaggagagaatattaaagagaaggacaatttctattccgtgagagaatgctttgatt 3640030  T

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Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 229 - 283
Target Start/End: Original strand, 4872396 - 4872450
Alignment:
Q  229 ttgatttacaaatgacaagctctcccctttgtataggttctaagagagagttcta 283  Q
    |||||||||||||||||||||||||||||| |||||| || ||| ||||||||||    
T  4872396 ttgatttacaaatgacaagctctcccctttttataggctccaagggagagttcta 4872450  T

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Target: chr1 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 229 - 285
Target Start/End: Complemental strand, 32238642 - 32238586
Alignment:
Q  229 ttgatttacaaatgacaagctctcccctttgtataggttctaagagagagttctaga 285  Q
    |||||||||||||||||||||||||||||| |||||| || ||| ||||||||||||    
T  32238642 ttgatttacaaatgacaagctctcccctttttataggctccaagggagagttctaga 32238586  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 233 - 285
Target Start/End: Complemental strand, 12074303 - 12074251
Alignment:
Q  233 tttacaaatgacaagctctcccctttgtataggttctaagagagagttctaga 285  Q
    |||||||||||||||||||||| ||| |||||| |  ||||||||||||||||    
T  12074303 tttacaaatgacaagctctcccatttttataggcttcaagagagagttctaga 12074251  T

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Target: scaffold0989 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: scaffold0989
Description:

Target: scaffold0989; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 115 - 188
Target Start/End: Original strand, 1119 - 1192
Alignment:
Q  115 tttgtgaggaattgaggaggagataatgtatgatagaagtacaatttctattgcttgagagaatgctttgattc 188  Q
    ||||||||||||| |||| |||| ||| | ||| ||||  |||||||||||| |||||||| || |||||||||    
T  1119 tttgtgaggaatttaggatgagagaatatttgagagaataacaatttctatttcttgagaggatactttgattc 1192  T

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Target: scaffold0989; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 229 - 285
Target Start/End: Original strand, 1205 - 1261
Alignment:
Q  229 ttgatttacaaatgacaagctctcccctttgtataggttctaagagagagttctaga 285  Q
    ||||||||||||||||| ||||||||| || |||||| || ||| |||| |||||||    
T  1205 ttgatttacaaatgacacgctctccccgttttataggctccaagggagatttctaga 1261  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 115 - 188
Target Start/End: Original strand, 18790940 - 18791013
Alignment:
Q  115 tttgtgaggaattgaggaggagataatgtatgatagaagtacaatttctattgcttgagagaatgctttgattc 188  Q
    |||||||| |||| |||||||||||||   ||| ||||| || ||||||||| |||||||| || |||||||||    
T  18790940 tttgtgagaaatttaggaggagataatacttgagagaagaactatttctattacttgagaggatactttgattc 18791013  T

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