View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3743_high_31 (Length: 307)

Name: NF3743_high_31
Description: NF3743
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3743_high_31
NF3743_high_31
[»] chr5 (1 HSPs)
chr5 (12-307)||(36964-37259)


Alignment Details
Target: chr5 (Bit Score: 288; Significance: 1e-161; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 12 - 307
Target Start/End: Complemental strand, 37259 - 36964
Alignment:
Q  12 atgaatatgtgcaagtgcaagcagatgcataccaacttttactaccattttaactagacaaaagatgcaaataaagcaatgtgtgtcataactatatgca 111  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  37259 atgaatatgtgcaagtgcaagcagatgcataccaagttttactaccattttaactagacaaaagatgcaaataaagaaatgtgtgtcataactatatgca 37160  T
Q  112 ctcatttcatcaaattttatcatcatggcttaattcttgatcttcaccaaattcaacatcttgcaaagaaatcttgtctattccacctgtcaataatctc 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37159 ctcatttcatcaaattttatcatcatggcttaattcttgatcttcaccaaattcaacatcttgcaaagaaatcttgtctattccacctgtcaataatctc 37060  T
Q  212 atttcttcttcagttaggctgttttttgcatgatgaaaggtcttttcatttgactttttctcagcctccgccgcccaactgtaaattatcatgcca 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37059 atttcttcttcagttaggctgttttttgcatgatgaaaggtcttttcatttgactttttctcagcctccgccgcccaactgtaaattatcatgcca 36964  T

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