View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3743_high_32 (Length: 303)
Name: NF3743_high_32
Description: NF3743
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3743_high_32 |
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Alignment Details
Target: chr5 (Bit Score: 126; Significance: 5e-65; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 171 - 296
Target Start/End: Original strand, 1310634 - 1310759
Alignment:
| Q |
171 |
gtaggccttcgtattcctgatgctgattctgcttcaccacaaaccattgatcttgttctccttactaaacggtattatttgtatctctttatgtttccga |
270 |
Q |
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| T |
1310634 |
gtaggccttcgtattcctgatgctgattctgcttcaccacaaaccattgatcttgttctccttactaaacggtattatttgtatctctttatgtttccga |
1310733 |
T |
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| Q |
271 |
cacttctgatacaaggtgtgtctgtg |
296 |
Q |
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| T |
1310734 |
cacttctgatacaaggtgtgtctgtg |
1310759 |
T |
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Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 1310453 - 1310495
Alignment:
| Q |
1 |
agcttctgattccactgttctcttctccgtatctaataggttc |
43 |
Q |
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| T |
1310453 |
agcttctgattccactgttctcttctccgtagctaataggttc |
1310495 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 202 - 246
Target Start/End: Original strand, 41728546 - 41728590
Alignment:
| Q |
202 |
cttcaccacaaaccattgatcttgttctccttactaaacggtatt |
246 |
Q |
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| T |
41728546 |
cttcaccacaaaccattgatcttcttctcctcactaaaaggtatt |
41728590 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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