View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3743_high_36 (Length: 256)
Name: NF3743_high_36
Description: NF3743
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3743_high_36 |
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| [»] chr5 (4 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 243; Significance: 1e-135; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 14 - 256
Target Start/End: Complemental strand, 37830212 - 37829970
Alignment:
| Q |
14 |
gagatgaaggaatggtccctgaaaacatattactatgtagatacaaccttaatagattagtcatgtttccaatattggttgggatattgccgctaagaag |
113 |
Q |
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| T |
37830212 |
gagatgaaggaatggtccctgaaaacatattactatgtagatacaaccttaatagattagtcatgtttccaatattggttgggatattgccgctaagaag |
37830113 |
T |
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| Q |
114 |
gttattgtgcaggctcacttcttcaagggattgaatttcaaataaagaatctggaattttaccagtcagaagattggaagacaatcttaaaaactttaaa |
213 |
Q |
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| T |
37830112 |
gttattgtgcaggctcacttcttcaagggattgaatttcaaataaagaatctggaattttaccagtcagaagattggaagacaatcttaaaaactttaaa |
37830013 |
T |
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| Q |
214 |
ttttgcaactttatcaaactatatgatatacttccactgaatc |
256 |
Q |
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| T |
37830012 |
ttttgcaactttatcaaactatatgatatacttccactgaatc |
37829970 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 18 - 256
Target Start/End: Complemental strand, 37841531 - 37841293
Alignment:
| Q |
18 |
tgaaggaatggtccctgaaaacatattactatgtagatacaaccttaatagattagtcatgtttccaatattggttgggatattgccgctaagaaggtta |
117 |
Q |
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| T |
37841531 |
tgaaggaatagtccctgaaaacatattacgatgtagatacaacctcaatagatgagtcaagtttccaatatttgttgggatagggccactgagaaggtta |
37841432 |
T |
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| Q |
118 |
ttgtgcaggctcacttcttcaagggattgaatttcaaataaagaatctggaattttaccagtcagaagattggaagacaatcttaaaaactttaaatttt |
217 |
Q |
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| T |
37841431 |
ctgtgtaggctcacttcttcgagggaatgaatttcaaacaatgaatctggaatttcaccagtcagcagattggaagacagtcctataacctttaaatttt |
37841332 |
T |
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| Q |
218 |
gcaactttatcaaactatatgatatacttccactgaatc |
256 |
Q |
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| T |
37841331 |
gcaactttttcaaactatatggtatctttccactgaatc |
37841293 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 14 - 256
Target Start/End: Complemental strand, 37849291 - 37849049
Alignment:
| Q |
14 |
gagatgaaggaatggtccctgaaaacatattactatgtagatacaaccttaatagattagtcatgtttccaatattggttgggatattgccgctaagaag |
113 |
Q |
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| T |
37849291 |
gagatgtaggaatagtccctgacaactgattaccatatagatacaacctcaatagacgagtcaagtttccaatatttgttgggataggaccactaagtag |
37849192 |
T |
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| Q |
114 |
gttattgtgcaggctcacttcttcaagggattgaatttcaaataaagaatctggaattttaccagtcagaagattggaagacaatcttaaaaactttaaa |
213 |
Q |
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| T |
37849191 |
gttactgtgcaggctaacttcttcaagggattgaatttgaaacaaagaatctggaatttcaccagtcaacatattggaagccaatgccataaactgtaac |
37849092 |
T |
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| Q |
214 |
ttttgcaactttatcaaactatatgatatacttccactgaatc |
256 |
Q |
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| T |
37849091 |
ttctgcaaatttttcaaagtatatggtatctttccactgaatc |
37849049 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 14 - 172
Target Start/End: Complemental strand, 37835916 - 37835758
Alignment:
| Q |
14 |
gagatgaaggaatggtccctgaaaacatattactatgtagatacaaccttaatagattagtcatgtttccaatattggttgggatattgccgctaagaag |
113 |
Q |
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| T |
37835916 |
gagatgaaggaatagtccctgacaactgattaccatatagatacaacctcaatagatgagtcaagtttccaatattggtcgggataggaccactaagaag |
37835817 |
T |
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| Q |
114 |
gttattgtgcaggctcacttcttcaagggattgaatttcaaataaagaatctggaattt |
172 |
Q |
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| T |
37835816 |
gttactgtgcaggtttacttcttccaaggatggaattttaaacaaggaatctggaattt |
37835758 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 112; Significance: 1e-56; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 14 - 216
Target Start/End: Complemental strand, 36864680 - 36864475
Alignment:
| Q |
14 |
gagatgaaggaatggtccctgaaaacatattactatgtagatacaac---cttaatagattagtcatgtttccaatattggttgggatattgccgctaag |
110 |
Q |
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| T |
36864680 |
gagatgaaggaatagtccctgaaaacatattaccatatagataatacagtctcaatagatgagtcaagtttccaatattggttggaatatttccactaag |
36864581 |
T |
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| Q |
111 |
aaggttattgtgcaggctcacttcttcaagggattgaatttcaaataaagaatctggaattttaccagtcagaagattggaagacaatcttaaaaacttt |
210 |
Q |
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| T |
36864580 |
aaggttattgtgcaggctcacttcttcaagggaaggaatttcaaataaagaatctggaatttcaccagtcaacaaattggaagacaatctcatagacttt |
36864481 |
T |
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| Q |
211 |
aaattt |
216 |
Q |
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|||||| |
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| T |
36864480 |
aaattt |
36864475 |
T |
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