View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3743_high_42 (Length: 249)
Name: NF3743_high_42
Description: NF3743
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3743_high_42 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 196; Significance: 1e-107; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 200
Target Start/End: Complemental strand, 36919 - 36720
Alignment:
| Q |
1 |
tgaatcaaatagcaaccatcccaacgttagaacacatactgttttcatgtggcctaaaacctggaaggaaacagcagaaaagcggccgatgcaaaggtac |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36919 |
tgaatcaaatagcaaccatcccaacgttagaacacatactgttttcatgtggcctaaaacctggaaggaaacagcagaaaagcggccgatgcaaaggtac |
36820 |
T |
|
| Q |
101 |
tggctcacattgcaaaatacagctagcgagcatgaaagaagaatgcataactgtagaggttaaagaaaaaagattaactgagtaatctaacactattttt |
200 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36819 |
tggctcacattgcaaaatacagctagggagcatgaaagaagaatgcataactgtagaggttaaagaaaaaagattaactgagtaatctaacactattttt |
36720 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 69; Significance: 4e-31; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 1 - 145
Target Start/End: Original strand, 8675405 - 8675549
Alignment:
| Q |
1 |
tgaatcaaatagcaaccatcccaacgttagaacacatactgttttcatgtggcctaaaacctggaaggaaacagcagaaaagcggccgatgcaaaggtac |
100 |
Q |
| |
|
|||||| |||| || ||| ||||| || |||||||||| ||||||||||||||||||||||||||||||||| || || ||||| || ||||| |||||| |
|
|
| T |
8675405 |
tgaatcgaataacagccaccccaaagtcagaacacataatgttttcatgtggcctaaaacctggaaggaaactgctgagaagcgcccaatgcagaggtac |
8675504 |
T |
|
| Q |
101 |
tggctcacattgcaaaatacagctagcgagcatgaaagaagaatg |
145 |
Q |
| |
|
||||| ||||| ||||| ||||||| | |||||||||||||||| |
|
|
| T |
8675505 |
tggcttacattacaaaacacagctaaggtgcatgaaagaagaatg |
8675549 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University