View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3743_high_46 (Length: 240)
Name: NF3743_high_46
Description: NF3743
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3743_high_46 |
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Alignment Details
Target: chr5 (Bit Score: 211; Significance: 1e-116; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 31877064 - 31876841
Alignment:
| Q |
1 |
acttcccctttcttaattcaacgatcacaaaactccactagaatgtggaaaccacttaaaaataacaaaatgtacccactaccaattaattccaatctaa |
100 |
Q |
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| T |
31877064 |
acttcccctttcttaattcaacgatcacaaaactccactagaatgtggaaaccacttaaaaataacaaaatgtacccactaccaattaattccaatctaa |
31876965 |
T |
|
| Q |
101 |
tgttagagagattcccatttgaacttaaaaaagtcttaaactactctttcattgtaccaaaaccctttgaacatgtctcacacaaattctaatctactac |
200 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31876964 |
tgttagaga--ttcccatttgaacttaaaaaagtcttaaactactctttcattataccaaaaccctttgaacatgtctcacacaaattctaatctactac |
31876867 |
T |
|
| Q |
201 |
ttatatatacattataacataaatac |
226 |
Q |
| |
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|||||||||||||||||||||||||| |
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| T |
31876866 |
ttatatatacattataacataaatac |
31876841 |
T |
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