View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3743_high_47 (Length: 239)
Name: NF3743_high_47
Description: NF3743
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3743_high_47 |
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Alignment Details
Target: chr4 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 16 - 221
Target Start/End: Complemental strand, 34750400 - 34750195
Alignment:
| Q |
16 |
agagagcactcaattctcagaatataagaggcatcaaaattggcaccccattagccatggatgtcttagaatcaaccttcccaccgtcaagtggaacatt |
115 |
Q |
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| T |
34750400 |
agagagcactcaattctcagaatataagaggcatcaaaattggcaccccattagccatggatgtcttagaatcaaccttcccaccgtcaagtggaacatt |
34750301 |
T |
|
| Q |
116 |
ccgatccgacataagagacggtgtgatggcaccaatgctcaaattcttaaacagaaccaattcatttttcttcattgatgcatacccatatttcccatgg |
215 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34750300 |
ccgatccgacataagagacagtgtgatggcaccaatgctcaaattcttaaacagaaccaattcatttttcttcattgatgcatacccatatttcccatgg |
34750201 |
T |
|
| Q |
216 |
tcacag |
221 |
Q |
| |
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|||||| |
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| T |
34750200 |
tcacag |
34750195 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 108; Significance: 2e-54; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 18 - 221
Target Start/End: Complemental strand, 26593742 - 26593539
Alignment:
| Q |
18 |
agagcactcaattctcagaatataagaggcatcaaaattggcaccccattagccatggatgtcttagaatcaaccttcccaccgtcaagtggaacattcc |
117 |
Q |
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||||||||||| || ||||| || ||||||||||||| || ||||||||||||||||||||||||| ||| ||| || ||| ||||||| || ||||||| |
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| T |
26593742 |
agagcactcaaatcacagaacatcagaggcatcaaaagtgacaccccattagccatggatgtcttacaattaacattaccaacgtcaagcgggacattcc |
26593643 |
T |
|
| Q |
118 |
gatccgacataagagacggtgtgatggcaccaatgctcaaattcttaaacagaaccaattcatttttcttcattgatgcatacccatatttcccatggtc |
217 |
Q |
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|||| ||| ||||||||||||||| |||||||||||||||||||| ||| ||||| |||||||||| ||||||||||||||||||||||||||||| |
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| T |
26593642 |
aatccaacaaaagagacggtgtgatagcaccaatgctcaaattctttgacatgaccaactcatttttctctattgatgcatacccatatttcccatggtc |
26593543 |
T |
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| Q |
218 |
acag |
221 |
Q |
| |
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|||| |
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| T |
26593542 |
acag |
26593539 |
T |
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