View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3743_high_52 (Length: 236)

Name: NF3743_high_52
Description: NF3743
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3743_high_52
NF3743_high_52
[»] chr2 (5 HSPs)
chr2 (1-221)||(29312119-29312339)
chr2 (77-217)||(34635532-34635670)
chr2 (80-217)||(29054693-29054828)
chr2 (10-80)||(34636004-34636074)
chr2 (10-80)||(29054861-29054928)
[»] chr7 (4 HSPs)
chr7 (77-217)||(13792423-13792563)
chr7 (77-217)||(28743679-28743819)
chr7 (14-80)||(13792593-13792659)
chr7 (10-80)||(28743579-28743649)
[»] scaffold0769 (2 HSPs)
scaffold0769 (77-217)||(4244-4382)
scaffold0769 (10-80)||(3840-3910)


Alignment Details
Target: chr2 (Bit Score: 221; Significance: 1e-122; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 29312119 - 29312339
Alignment:
Q  1 gctgtaagctggcttcatgtgggaaatagagttcacacttttgttgctggagacaaaagtaatattgagagtgatgaaataaaagtggctggatataagc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29312119 gctgtaagctggcttcatgtgggaaatagagttcacacttttgttgctggagacaaaagtaatattgagagtgatgaaataaaagtggctggatataagc 29312218  T
Q  101 ctgactctgatcatgttcttcatgatattgatcaagaggaaaaagctgagaatctttatgaccatagtgagaagcttgcggttgcattcgggatacttaa 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29312219 ctgactctgatcatgttcttcatgatattgatcaagaggaaaaagctgagaatctttatgaccatagtgagaagcttgcggttgcattcgggatacttaa 29312318  T
Q  201 tttgaatggacagtcgatgat 221  Q
    |||||||||||||||||||||    
T  29312319 tttgaatggacagtcgatgat 29312339  T

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Target: chr2; HSP #2
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 77 - 217
Target Start/End: Complemental strand, 34635670 - 34635532
Alignment:
Q  77 aaataaaagtggctggatataagcctgactctgatcatgttcttcatgatattgatcaagaggaaaaagctgagaatctttatgaccatagtgagaagct 176  Q
    ||||||||| ||||||||||||||  ||| ||||| ||||||| ||||||||||||||||||||||||| ||||| ||||| | | ||||||||||||||    
T  34635670 aaataaaagcggctggatataagc--gacactgataatgttctgcatgatattgatcaagaggaaaaagttgagagtctttgtaagcatagtgagaagct 34635573  T
Q  177 tgcggttgcattcgggatacttaatttgaatggacagtcga 217  Q
    ||| |||||||| |||||||||||||||||||| |||||||    
T  34635572 tgccgttgcatttgggatacttaatttgaatgggcagtcga 34635532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 80 - 217
Target Start/End: Complemental strand, 29054828 - 29054693
Alignment:
Q  80 taaaagtggctggatataagcctgactctgatcatgttcttcatgatattgatcaagaggaaaaagctgagaatctttatgaccatagtgagaagcttgc 179  Q
    |||||||||| ||||||||| ||||| ||||| ||||||||  ||||||| ||  |||||||||| |||||||||||| | |||||||||||||||||||    
T  29054828 taaaagtggccggatataaggctgacactgattatgttcttggtgatattaat--agaggaaaaaactgagaatctttgtaaccatagtgagaagcttgc 29054731  T
Q  180 ggttgcattcgggatacttaatttgaatggacagtcga 217  Q
     |||||||| ||||||||||||||||||||||||||||    
T  29054730 tgttgcatttgggatacttaatttgaatggacagtcga 29054693  T

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Target: chr2; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 10 - 80
Target Start/End: Complemental strand, 34636074 - 34636004
Alignment:
Q  10 tggcttcatgtgggaaatagagttcacacttttgttgctggagacaaaagtaatattgagagtgatgaaat 80  Q
    ||||||||||||||||||||||||||||  |||||||||||||||||||||||||| |||| |||| ||||    
T  34636074 tggcttcatgtgggaaatagagttcacaactttgttgctggagacaaaagtaatatggagaatgataaaat 34636004  T

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Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 10 - 80
Target Start/End: Complemental strand, 29054928 - 29054861
Alignment:
Q  10 tggcttcatgtgggaaatagagttcacacttttgttgctggagacaaaagtaatattgagagtgatgaaat 80  Q
    ||||||||||| || ||||||||||||||||||||   |||||||||||||||||| ||||||||| ||||    
T  29054928 tggcttcatgtaggtaatagagttcacacttttgt---tggagacaaaagtaatatggagagtgataaaat 29054861  T

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Target: chr7 (Bit Score: 105; Significance: 1e-52; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 77 - 217
Target Start/End: Complemental strand, 13792563 - 13792423
Alignment:
Q  77 aaataaaagtggctggatataagcctgactctgatcatgttcttcatgatattgatcaagaggaaaaagctgagaatctttatgaccatagtgagaagct 176  Q
    ||||||||| ||||||||||||||||||| ||||| ||||||| ||||||||||||||||||||||||||||||| ||||| | ||||||||||||||||    
T  13792563 aaataaaagcggctggatataagcctgacactgattatgttctgcatgatattgatcaagaggaaaaagctgagagtctttgtaaccatagtgagaagct 13792464  T
Q  177 tgcggttgcattcgggatacttaatttgaatggacagtcga 217  Q
    ||| |||||||| ||||||||||||||||||||||||||||    
T  13792463 tgctgttgcatttgggatacttaatttgaatggacagtcga 13792423  T

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Target: chr7; HSP #2
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 77 - 217
Target Start/End: Original strand, 28743679 - 28743819
Alignment:
Q  77 aaataaaagtggctggatataagcctgactctgatcatgttcttcatgatattgatcaagaggaaaaagctgagaatctttatgaccatagtgagaagct 176  Q
    |||| ||| |||||||||||||||||||| ||||| ||||||| || |||||||||||||||||||||||||||| ||| | | ||||||||||||||||    
T  28743679 aaatgaaaatggctggatataagcctgacactgattatgttctgcaagatattgatcaagaggaaaaagctgagagtctctgtaaccatagtgagaagct 28743778  T
Q  177 tgcggttgcattcgggatacttaatttgaatggacagtcga 217  Q
    ||| ||||| || ||||||||||||||||||||||||||||    
T  28743779 tgctgttgcctttgggatacttaatttgaatggacagtcga 28743819  T

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Target: chr7; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 14 - 80
Target Start/End: Complemental strand, 13792659 - 13792593
Alignment:
Q  14 ttcatgtgggaaatagagttcacacttttgttgctggagacaaaagtaatattgagagtgatgaaat 80  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||    
T  13792659 ttcatgtgggaaatagagttcacacttttgttgctggagacaaaagtaatatggagagtgataaaat 13792593  T

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Target: chr7; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 10 - 80
Target Start/End: Original strand, 28743579 - 28743649
Alignment:
Q  10 tggcttcatgtgggaaatagagttcacacttttgttgctggagacaaaagtaatattgagagtgatgaaat 80  Q
    |||||||| |||||||||| ||||||||||||||||| ||||||||||||||||||||| |||||| ||||    
T  28743579 tggcttcaagtgggaaataaagttcacacttttgttgttggagacaaaagtaatattgaaagtgataaaat 28743649  T

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Target: scaffold0769 (Bit Score: 82; Significance: 7e-39; HSPs: 2)
Name: scaffold0769
Description:

Target: scaffold0769; HSP #1
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 77 - 217
Target Start/End: Original strand, 4244 - 4382
Alignment:
Q  77 aaataaaagtggctggatataagcctgactctgatcatgttcttcatgatattgatcaagaggaaaaagctgagaatctttatgaccatagtgagaagct 176  Q
    ||||||||| ||||||||||||||  ||| ||||| ||||||| ||||||||||||||||||||||||| ||||| ||||| | | ||||||||||||||    
T  4244 aaataaaagcggctggatataagc--gacactgataatgttctgcatgatattgatcaagaggaaaaagttgagagtctttgtaagcatagtgagaagct 4341  T
Q  177 tgcggttgcattcgggatacttaatttgaatggacagtcga 217  Q
    ||| |||||||| |||||||||||||||||||| |||||||    
T  4342 tgccgttgcatttgggatacttaatttgaatgggcagtcga 4382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0769; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 10 - 80
Target Start/End: Original strand, 3840 - 3910
Alignment:
Q  10 tggcttcatgtgggaaatagagttcacacttttgttgctggagacaaaagtaatattgagagtgatgaaat 80  Q
    ||||||||||||||||||||||||||||  |||||||||||||||||||||||||| |||| |||| ||||    
T  3840 tggcttcatgtgggaaatagagttcacaactttgttgctggagacaaaagtaatatggagaatgataaaat 3910  T

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