View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3743_high_55 (Length: 227)
Name: NF3743_high_55
Description: NF3743
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3743_high_55 |
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| [»] chr7 (3 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 207; Significance: 1e-113; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 32014031 - 32014257
Alignment:
| Q |
1 |
ttatgagtgatattcgttgtccaaataattgggaggattagaagggattttgtctcctggaagagcaatatcaaaagtgtgtcgtgggtgggtaatgttc |
100 |
Q |
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| T |
32014031 |
ttatgagtgatattcgttgtccaaataattgggaggattagaagggattgtgtctcctggaagagcaatataaaaagtgtgtcgtgggtgggtaatgttc |
32014130 |
T |
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| Q |
101 |
aaacacaaccttacaacaattcagactttcatacaaaaaataaaatcctaacattcccacattcatcatcctttttgtcatttctcttggtgtcctatgt |
200 |
Q |
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| T |
32014131 |
aaacacaaccttacaacaattcagactctcatacaaaaaataaaatcctaacattcccatattcatcatcctttttgtcatttctctcggtgtcctatgt |
32014230 |
T |
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| Q |
201 |
gctttagattggaactgtactcgggct |
227 |
Q |
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| T |
32014231 |
gctttagattggaactgtactcgggct |
32014257 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 161 - 227
Target Start/End: Original strand, 32014384 - 32014451
Alignment:
| Q |
161 |
attcatcatcctttttgtcatttctcttggtgtcctatgtgctttaga-ttggaactgtactcgggct |
227 |
Q |
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| T |
32014384 |
attcatcatactttatgtcatttctcttggtgtcctaggtaatttagatttggaactgtactcgggct |
32014451 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 161 - 227
Target Start/End: Original strand, 32014570 - 32014637
Alignment:
| Q |
161 |
attcatcatcctttttgtcatttctcttggtgtcctatgtgctttaga-ttggaactgtactcgggct |
227 |
Q |
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| T |
32014570 |
attcatcatcctttgtgtcatttctcccggtgtcctaggtaatttagatttggaactgtacttgggct |
32014637 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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