View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3743_high_56 (Length: 220)
Name: NF3743_high_56
Description: NF3743
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3743_high_56 |
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Alignment Details
Target: chr4 (Bit Score: 94; Significance: 5e-46; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 12 - 133
Target Start/End: Original strand, 4347854 - 4347975
Alignment:
| Q |
12 |
catcatcctattcggacagtgctgcatttgttttcttaatgatctgtgtaattgctttgctttcctcaaacagtggtttactaagccatttaatctttaa |
111 |
Q |
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| T |
4347854 |
catcatcctattgggggagtgctgcatttgttttcttaatgacctgtgtaattgctttgctttcgtcaaacagtggtttactaagccatttaatctttaa |
4347953 |
T |
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| Q |
112 |
ttttctttcaggtcttaaaagc |
133 |
Q |
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| T |
4347954 |
ttttctttctggtcttcaaagc |
4347975 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 133 - 220
Target Start/End: Original strand, 4348543 - 4348629
Alignment:
| Q |
133 |
cgccgaatcatggaaaaaattctggatttgttgttcatatgattgtcatggaaggaagatgaagatcaaaggaagatattaagtggtc |
220 |
Q |
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| T |
4348543 |
cgccgaatc-tggaaaaaattctggatttgttgttcatatgattgtcatggaaggaagatgaagatcaaaggaagatattaagtggtc |
4348629 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 76 - 126
Target Start/End: Complemental strand, 4318539 - 4318489
Alignment:
| Q |
76 |
ctcaaacagtggtttactaagccatttaatctttaattttctttcaggtct |
126 |
Q |
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| T |
4318539 |
ctcatacagtggtttactaagccattcaatcttttattttctttcaggtct |
4318489 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 67 - 130
Target Start/End: Complemental strand, 4121037 - 4120973
Alignment:
| Q |
67 |
tttgctttcctcaaacagtggtttactaagccatttaatctttaa-ttttctttcaggtcttaaa |
130 |
Q |
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| T |
4121037 |
tttgctttcctgatacagtggtttactaagctattcattctttaatttttctttcaggtcttaaa |
4120973 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 87 - 133
Target Start/End: Original strand, 4364375 - 4364421
Alignment:
| Q |
87 |
gtttactaagccatttaatctttaattttctttcaggtcttaaaagc |
133 |
Q |
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| T |
4364375 |
gtttactaagacattcaatctttaattttctttcaggtcttcaaagc |
4364421 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 12 - 73
Target Start/End: Original strand, 4364244 - 4364305
Alignment:
| Q |
12 |
catcatcctattcggacagtgctgcatttgttttcttaatgatctgtgtaattgctttgctt |
73 |
Q |
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| T |
4364244 |
catcaacctattgggaaagtactgaatttgttttcttaatgacctgtataattgctttgctt |
4364305 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 90 - 133
Target Start/End: Complemental strand, 4131116 - 4131073
Alignment:
| Q |
90 |
tactaagccatttaatctttaattttctttcaggtcttaaaagc |
133 |
Q |
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| T |
4131116 |
tactaagccattcaatctttaattttctttcagatcttcaaagc |
4131073 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 72 - 126
Target Start/End: Original strand, 4338504 - 4338557
Alignment:
| Q |
72 |
tttcctcaaacagtggtttactaagccatttaatctttaattttctttcaggtct |
126 |
Q |
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| T |
4338504 |
tttcctcatacaatggtttactaagc-attcaacctttaattttctttcaggtct |
4338557 |
T |
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