View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3743_high_58 (Length: 210)
Name: NF3743_high_58
Description: NF3743
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3743_high_58 |
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Alignment Details
Target: chr5 (Bit Score: 146; Significance: 4e-77; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 146; E-Value: 4e-77
Query Start/End: Original strand, 19 - 184
Target Start/End: Complemental strand, 33138639 - 33138479
Alignment:
| Q |
19 |
tatgtaaaactgttcaatttatcttgttagtgtcggtagaagtgacaaaaaccattgaaaagaaaatgctatcataactaaagtccaaagcttccttcat |
118 |
Q |
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| T |
33138639 |
tatgtaaaactgttcaatttatcttgttagtgtcggtagaagtgacaaaaaccattgaaaagaaaatgctatcataactaaagtccaaagcttccttcat |
33138540 |
T |
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| Q |
119 |
ttttatccaaaaatagcgtgtcattcagggcatttgtagaagttaagttggccacaacattcattg |
184 |
Q |
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| T |
33138539 |
ttttatccaaaaatagcgtgtcattcagggcatttgtaga-----agttggccacaacattcattg |
33138479 |
T |
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