View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3743_low_11 (Length: 441)
Name: NF3743_low_11
Description: NF3743
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3743_low_11 |
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| [»] chr7 (1 HSPs) |
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| [»] chr1 (1 HSPs) |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 437; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 437; E-Value: 0
Query Start/End: Original strand, 1 - 441
Target Start/End: Original strand, 48301348 - 48301788
Alignment:
| Q |
1 |
tcatcagacccatattggtcagagtcctcatcgtcttcaaacttttcctcctcactctgaggagtctccctgaatttgataatcaagtcctcgtattgct |
100 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48301348 |
tcatcggacccatattggtcagagtcctcatcgtcttcaaacttttcctcctcactctgaggagtctccctgaatttgataatcaagtcctcgtattgct |
48301447 |
T |
|
| Q |
101 |
tattgttcttcttcaatttttgcttcattgagttgaaggctttggcattggtgggactcatcttctttttggcatccttattagaagaagcctgagcgag |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48301448 |
tattgttcttcttcaatttttgcttcattgagttgaaggctttggcattggtgggactcatcttctttttggcatccttattagaagaagcctgagcgag |
48301547 |
T |
|
| Q |
201 |
gaaatcttcaagcattacaagagccttgatgtagagattggggatcttttgggactctataacacgcataactttgtcgagctgtttgttgatcttatca |
300 |
Q |
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| T |
48301548 |
gaaatcttcaagcattacaagagccttgatgtagagattggggatcttttgggactctataacacgcataactttgtcgagctgtttgttgatcttatca |
48301647 |
T |
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| Q |
301 |
aaggtctcttgcaagctgacccagtcattgatcttgatggcattcttgatctgatcgacagtggaagccatctcatcaaaacgcttatctttagcagact |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48301648 |
aaggtctcttgcaagctgacccagtcattgatcttgatggcattcttgatctgatcgacagtggaagccatctcatcaaaacgcttatctttagcagact |
48301747 |
T |
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| Q |
401 |
taacaacacgcttttggccatcatcatcgtcactgtcatca |
441 |
Q |
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| T |
48301748 |
taacaacacgcttttggccatcatcatcgtcactgtcatca |
48301788 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 345; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 1 - 441
Target Start/End: Complemental strand, 7388886 - 7388446
Alignment:
| Q |
1 |
tcatcagacccatattggtcagagtcctcatcgtcttcaaacttttcctcctcactctgaggagtctccctgaatttgataatcaagtcctcgtattgct |
100 |
Q |
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||||| ||| |||||| ||||||||| |||||||||||| |||||| ||||||||| |||| |||||||| ||||||||||||||||||||||||||| |
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| T |
7388886 |
tcatcggactcatattcgtcagagtcttcatcgtcttcatccttttcgccctcactctcaggactctccctgcatttgataatcaagtcctcgtattgct |
7388787 |
T |
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| Q |
101 |
tattgttcttcttcaatttttgcttcattgagttgaaggctttggcattggtgggactcatcttctttttggcatccttattagaagaagcctgagcgag |
200 |
Q |
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| T |
7388786 |
tattgttcttctttaatttttgcttcattgagttgaaggctttggcattgctgggactcatcttctttttggcatccttattagcagaagcctgagcgag |
7388687 |
T |
|
| Q |
201 |
gaaatcttcaagcattacaagagccttgatgtagagattggggatcttttgggactctataacacgcataactttgtcgagctgtttgttgatcttatca |
300 |
Q |
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| T |
7388686 |
gacatcttcaagcattacgagcgccttgatgtagagattggggatcttttgggactcgataacacgcataactttctcgagctgtttgttgatcttgtca |
7388587 |
T |
|
| Q |
301 |
aaggtctcttgcaagctgacccagtcattgatcttgatggcattcttgatctgatcgacagtggaagccatctcatcaaaacgcttatctttagcagact |
400 |
Q |
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||| |||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7388586 |
aagctctcttgcaagctgacccagtcattgatcttgatagcattcttgatctgatcaacagtggaagccatctcatcaaaacgcttatctttagcagact |
7388487 |
T |
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| Q |
401 |
taacaacacgcttttggccatcatcatcgtcactgtcatca |
441 |
Q |
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| T |
7388486 |
taacaacacgcttttggccatcatcatcgtcgctgtcatca |
7388446 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 336; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 18 - 441
Target Start/End: Original strand, 236936 - 237359
Alignment:
| Q |
18 |
gtcagagtcctcatcgtcttcaaacttttcctcctcactctgaggagtctccctgaatttgataatcaagtcctcgtattgcttattgttcttcttcaat |
117 |
Q |
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||||||||| ||||| || ||| ||||||| |||| |||| |||| |||||||| |||||||||||||||||||||||||||||||||||||||||| | |
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| T |
236936 |
gtcagagtcgtcatcatcgtcatccttttccccctcgctctcaggactctccctgcatttgataatcaagtcctcgtattgcttattgttcttcttcagt |
237035 |
T |
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| Q |
118 |
ttttgcttcattgagttgaaggctttggcattggtgggactcatcttctttttggcatccttattagaagaagcctgagcgaggaaatcttcaagcatta |
217 |
Q |
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|| ||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
237036 |
ttctgcttcattgagttgaaagctttggcattgctgggactcatcttctttttggcatccttattagcagaagcctgagcgaggaaatcttcaagcatta |
237135 |
T |
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| Q |
218 |
caagagccttgatgtagagattggggatcttttgggactctataacacgcataactttgtcgagctgtttgttgatcttatcaaaggtctcttgcaagct |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||| |||||| ||||||||||||| |
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| T |
237136 |
caagagccttgatgtagagattggggatcttttgggactcgataacacgcataactttctcgagctgtttgttgatcttgtcaaagctctcttgcaagct |
237235 |
T |
|
| Q |
318 |
gacccagtcattgatcttgatggcattcttgatctgatcgacagtggaagccatctcatcaaaacgcttatctttagcagacttaacaacacgcttttgg |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
237236 |
gacccagtcattgatcttgatggcattcttgatctgatcgacggtggaagccatctcatcaaaacgcttatctttagcagatttaacaacacgcttttgg |
237335 |
T |
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| Q |
418 |
ccatcatcatcgtcactgtcatca |
441 |
Q |
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|||||||| ||||||||||||||| |
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| T |
237336 |
ccatcatcgtcgtcactgtcatca |
237359 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 280 - 329
Target Start/End: Complemental strand, 16579166 - 16579117
Alignment:
| Q |
280 |
agctgtttgttgatcttatcaaaggtctcttgcaagctgacccagtcatt |
329 |
Q |
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||||||||||||||||| |||||| |||||||||| || |||||||||| |
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| T |
16579166 |
agctgtttgttgatcttgtcaaagctctcttgcaaccttccccagtcatt |
16579117 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 280 - 329
Target Start/End: Original strand, 16616214 - 16616263
Alignment:
| Q |
280 |
agctgtttgttgatcttatcaaaggtctcttgcaagctgacccagtcatt |
329 |
Q |
| |
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||||||||||||||||| |||||| |||||||||| || |||||||||| |
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| T |
16616214 |
agctgtttgttgatcttgtcaaagctctcttgcaaccttccccagtcatt |
16616263 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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