View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3743_low_15 (Length: 403)
Name: NF3743_low_15
Description: NF3743
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3743_low_15 |
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Alignment Details
Target: chr8 (Bit Score: 371; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 1 - 391
Target Start/End: Complemental strand, 25011357 - 25010967
Alignment:
| Q |
1 |
tagtgaaagaattggatttggtgcagtcacaaatttcatgtattcacacagtcagcacattagtgatggttggatcgtgattagactgtcatgagttcaa |
100 |
Q |
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| T |
25011357 |
tagtgaaagaattggatttggtgcagtcacaaatttcatgtattcacacagtcagcacattagtgatggttggatcgtgattagactgtcatgagttcaa |
25011258 |
T |
|
| Q |
101 |
atcctatatgggacaattgtaaaatgatcattagtgctaacctttattaatagtaataatttcaaatttgtttttaaactgaaactcaccgcacctctct |
200 |
Q |
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| T |
25011257 |
atcctatatggaacaattgtaaaatgatcattagtgctaacctttattaataataataatttcaaatttgtttttaaactgaaactcaccgcacctctct |
25011158 |
T |
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| Q |
201 |
aaggatacttaaaaatgagcagacagaagtttacgctgttaccatttttgctttttactagacaagtctgtttattctgcaactgactagatgatatttc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| |
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| T |
25011157 |
aaggatacttaaaaatgagcagacagaagtttacgctgttaccatttttgctttttactagacaagtctgtttattttgcaactgactagatgacatttc |
25011058 |
T |
|
| Q |
301 |
atttgaatttggctcctttgtaggcgttggaaagatgtgagtattggcgcttgtcggatcagcagggaaaaccccctggcgttatgggatg |
391 |
Q |
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| T |
25011057 |
atttgaatttggctcctttgtaggcgttggaaagatgtgagtattggcgcttgtcggatcagcagggaaaaccccctggtgttatgggatg |
25010967 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 93 - 132
Target Start/End: Complemental strand, 4752841 - 4752802
Alignment:
| Q |
93 |
gagttcaaatcctatatgggacaattgtaaaatgatcatt |
132 |
Q |
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| T |
4752841 |
gagttcaaatcctatatggaacagttgtaaaatgatcatt |
4752802 |
T |
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