View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3743_low_16 (Length: 392)
Name: NF3743_low_16
Description: NF3743
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3743_low_16 |
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Alignment Details
Target: chr2 (Bit Score: 327; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 20 - 377
Target Start/End: Complemental strand, 36458701 - 36458344
Alignment:
| Q |
20 |
aaacgtaatttaatttacggtgtcgattctctagaattttctaaattattcaggctgaagtctggactagtcaacagtggagtttcttgggttacatttc |
119 |
Q |
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| T |
36458701 |
aaacgtaatttaatttacggtgtcgattctctagaatttgctaaattattcagactgaagtctggactagtcaacagtggagtttcttgggttacatttc |
36458602 |
T |
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| Q |
120 |
acagctcatatgattttgggtatctagttaagattttgactcagaattacttaccgtctcgattggaggaattcttaagcatcttaac-gaaatattttg |
218 |
Q |
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| T |
36458601 |
acagctcatatgattttgggtatctagttaagattttgactcagaattacttaccgtctcgattggaggaattcttaagcatcttaacacaaata-tttg |
36458503 |
T |
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| Q |
219 |
gacggaatgtctatgatatgaagtatatgatcaaattctgcaacttatatggtggtctggaacgtgttgccactaaactcaaggtcagccgggcggtcgg |
318 |
Q |
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| T |
36458502 |
gacagaatgtctatgatatgaagtatatgatcaaattctgcaacttatatggtggtctggaacgtgttgccactaaactcaaggtcagccgggcggtcgg |
36458403 |
T |
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| Q |
319 |
aaactctcatcaagccgcgtcagatagtttgttgacatggcaagcttttaagaagatga |
377 |
Q |
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| T |
36458402 |
aaactctcatcaagccgcgtcagatagtttgttgacatggcaagcttttaagaagatga |
36458344 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 317 - 379
Target Start/End: Complemental strand, 40871718 - 40871656
Alignment:
| Q |
317 |
ggaaactctcatcaagccgcgtcagatagtttgttgacatggcaagcttttaagaagatgatg |
379 |
Q |
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| T |
40871718 |
ggaaagtcgcatcaagctggatcagatagtttgttgacatggcatgcatttaagaaaatgatg |
40871656 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 317 - 379
Target Start/End: Complemental strand, 40874816 - 40874754
Alignment:
| Q |
317 |
ggaaactctcatcaagccgcgtcagatagtttgttgacatggcaagcttttaagaagatgatg |
379 |
Q |
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||||| ||||||||||| | ||||||||||||||||| ||||| || |||||||| |||||| |
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| T |
40874816 |
ggaaagtctcatcaagctggatcagatagtttgttgacgtggcatgcatttaagaaaatgatg |
40874754 |
T |
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