View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3743_low_19 (Length: 367)
Name: NF3743_low_19
Description: NF3743
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3743_low_19 |
 | |
|
| [»] chr8 (3 HSPs) |
| |
|
| [»] scaffold0041 (2 HSPs) |
| | |
|
| [»] scaffold0111 (1 HSPs) |
| | |
|
Alignment Details
Target: chr8 (Bit Score: 305; Significance: 1e-171; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 12 - 367
Target Start/End: Original strand, 28975697 - 28976054
Alignment:
| Q |
12 |
agcatagggtttatctcctttgttgagaaccaaccttccacgaaggtttctcttacacacattgaccccctattcataaattggctgagtaatacgaatn |
111 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28975697 |
agcatagggtttatctcctttgttgagaaccaaccttccacgaaggtttctcttacacacattgaccccctattcataaattggctgagtaatacgaata |
28975796 |
T |
|
| Q |
112 |
nnnnnnnnnnnnn--tctcaccacggattgtaggttgtggtatattgtcgttggtagctttgccatgcgatgcaacaagtgcttgtgcaaaggaccgcgg |
209 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28975797 |
gagagagagagagagtctcaccacggattgtaggttgtggtatattgtcgttggtagctttgccatgcgatgcaacaagtgcttgtgcaaaggaccgcgg |
28975896 |
T |
|
| Q |
210 |
tggtggttgtggtgctggaaccgccgttgtggacggcagtgccatgggagatggtgcagctttggaggatgcagctgccggcaataacaactctgcctgc |
309 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28975897 |
tggtggttgtggtgctggaaccgccgttgtggacggcagtgccatgggagatggtgcagctttggaggatgcagctgccggcaataacaactctgcctgc |
28975996 |
T |
|
| Q |
310 |
tagtcgaacggcatagcagaaagtctgtccgtaagtgatcaatcaaatcacgtaactt |
367 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28975997 |
tagtcgaacggcatagcagaaagtctgtccgtaagtgatcaatcaaatcacgtaactt |
28976054 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 19 - 89
Target Start/End: Complemental strand, 29041472 - 29041402
Alignment:
| Q |
19 |
ggtttatctcctttgttgagaaccaaccttccacgaaggtttctcttacacacattgaccccctattcata |
89 |
Q |
| |
|
||||| |||| ||||||||||||||| |||||||| || ||||||||||||||||||||||||| |||||| |
|
|
| T |
29041472 |
ggtttgtctcatttgttgagaaccaatcttccacggagatttctcttacacacattgacccccttttcata |
29041402 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 175 - 324
Target Start/End: Complemental strand, 29041322 - 29041173
Alignment:
| Q |
175 |
tgcgatgcaacaagtgcttgtgcaaaggaccgcggtggtggttgtggtgctggaaccgccgttgtggacggcagtgccatgggagatggtgcagctttgg |
274 |
Q |
| |
|
|||||||| || || |||| |||||||| ||| || ||||||| ||||||| |||||||| || || | ||| |||||||||||||||||| |||||| |
|
|
| T |
29041322 |
tgcgatgccaccagagctttagcaaaggaacgcagttgtggttgaggtgctgaaaccgccgctgctgaagtcagagccatgggagatggtgcaactttgg |
29041223 |
T |
|
| Q |
275 |
aggatgcagctgccggcaataacaactctgcctgctagtcgaacggcata |
324 |
Q |
| |
|
| | | |||||||||||| | ||| || ||||| ||||||| |||||| |
|
|
| T |
29041222 |
atggtatagctgccggcaaggagaacactacctgccagtcgaaaggcata |
29041173 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 193; Significance: 1e-105; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 13 - 360
Target Start/End: Original strand, 33066548 - 33066888
Alignment:
| Q |
13 |
gcatagggtttatctcctttgttgagaaccaaccttccacgaaggtttctcttacacacattgaccccctattcataaattggctgagtaatacgaatnn |
112 |
Q |
| |
|
||||||||||||| ||||||||| ||||||||||||||||||| |||||||||||||||||||||||| | ||||||||||||||||||||||||||| |
|
|
| T |
33066548 |
gcatagggtttatgtcctttgtttagaaccaaccttccacgaatgtttctcttacacacattgacccc-tgttcataaattggctgagtaatacgaatag |
33066646 |
T |
|
| Q |
113 |
nnnnnnnnnnnntctcaccacggattgtaggttgtggtatattgtcgttggtagctttgccatgcgatgcaacaagtgcttgtgcaaaggaccgcggtgg |
212 |
Q |
| |
|
|||| |||| ||||||||||||||| |||||||| |||||||||||| | ||||||||||||||||||||||||||||||||||| || |
|
|
| T |
33066647 |
agagag------tctccccacagattgtaggttgtggcatattgtcattggtagctttgtcgtgcgatgcaacaagtgcttgtgcaaaggaccgcggcgg |
33066740 |
T |
|
| Q |
213 |
tggttgtggtgctggaaccgccgttgtggacggcagtgccatgggagatggtgcagctttggaggatgcagctgccggcaataacaactctgcctgctag |
312 |
Q |
| |
|
||||||||||| |||||||||||||||||| || |||||||| || ||| ||||||||||||| |||||||| |||||||||||||||||||||| || |
|
|
| T |
33066741 |
tggttgtggtgatggaaccgccgttgtggagggttgtgccatgagaaatgacgcagctttggagggtgcagctgtcggcaataacaactctgcctgccag |
33066840 |
T |
|
| Q |
313 |
tcgaacggcatagcagaaagtctgtccgtaagtgatcaatcaaatcac |
360 |
Q |
| |
|
||||||| ||||| ||||||| |||||||||||||||||||||||||| |
|
|
| T |
33066841 |
tcgaacgacatagtagaaagtatgtccgtaagtgatcaatcaaatcac |
33066888 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 28 - 110
Target Start/End: Original strand, 21493508 - 21493590
Alignment:
| Q |
28 |
cctttgttgagaaccaaccttccacgaaggtttctcttacacacattgaccccctattcataaattggctgagtaatacgaat |
110 |
Q |
| |
|
||||||||||| |||| ||| |||||||||||||||||||| | |||||||||| ||| || | |||||||||||||||||| |
|
|
| T |
21493508 |
cctttgttgaggaccagcctcccacgaaggtttctcttacaaaagttgacccccttttcgtacaatggctgagtaatacgaat |
21493590 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 175 - 331
Target Start/End: Original strand, 21493649 - 21493805
Alignment:
| Q |
175 |
tgcgatgcaacaagtgcttgtgcaaaggaccgcggtggtggttgtggtgctggaaccgccgttgtggacggcagtgccatgggagatggtgcagctttgg |
274 |
Q |
| |
|
|||||||| || || ||||||||||||||| |||||||| |||| ||||||| ||| | || || || | ||||||||||||||| | || ||| |
|
|
| T |
21493649 |
tgcgatgccaccagagcttgtgcaaaggacttcggtggtgcctgtgctgctggagtcgcagctggtgaagggattgccatgggagatggcgttgccatgg |
21493748 |
T |
|
| Q |
275 |
aggatgcagctgccggcaataacaactctgcctgctagtcgaacggcatagcagaaa |
331 |
Q |
| |
|
| |||||||| ||||||| | |||||||||||| ||||||||||||| ||||||| |
|
|
| T |
21493749 |
gtgttgcagctgtcggcaatgaaaactctgcctgccagtcgaacggcatggcagaaa |
21493805 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 180; Significance: 4e-97; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 180; E-Value: 4e-97
Query Start/End: Original strand, 13 - 335
Target Start/End: Original strand, 10304579 - 10304898
Alignment:
| Q |
13 |
gcatagggtttatctccttt--gttgagaaccaaccttccacgaaggtttctcttacacacattgaccccc-tattcataaattggctgagtaatacgaa |
109 |
Q |
| |
|
|||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||| |||||||||||| |
|
|
| T |
10304579 |
gcatagggtttatctcctttttgtttagaaccaaccttccacgaaggtttctcttacacacattgacccctgtgttcataaattggccgagtaatacgaa |
10304678 |
T |
|
| Q |
110 |
tnnnnnnnnnnnnnntctcaccacggattgtaggttgtggtatattgtcgttggtagctttgccatgcgatgcaacaagtgcttgtgcaaaggaccgcgg |
209 |
Q |
| |
|
| ||||||||||||||||||||||||| | |||| ||| |||||||||||| |||||||| ||||||||||||||||||||||||| |
|
|
| T |
10304679 |
tagagagag------tctcaccacggattgtaggttgtggcagattgccgtaggtagctttgccgtgcgatgcgacaagtgcttgtgcaaaggaccgcga |
10304772 |
T |
|
| Q |
210 |
tggtggttgtggtgctggaaccgccgttgtggacggcagtgccatgggagatggtgcagctttggaggatgcagctgccggcaataacaactctgcctgc |
309 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||| ||||||| |||||||||||||||||||||| |
|
|
| T |
10304773 |
cggtggttgtggtgctggaaccgccgttgtggagggcagtgccatgagagatggtgcagctttggagggcgcagctgtcggcaataacaactctgcctgc |
10304872 |
T |
|
| Q |
310 |
tagtcgaacggcatagcagaaagtct |
335 |
Q |
| |
|
| ||||||||| ||||||||||||| |
|
|
| T |
10304873 |
caatcgaacggcctagcagaaagtct |
10304898 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 13 - 335
Target Start/End: Original strand, 10288865 - 10289169
Alignment:
| Q |
13 |
gcatagggtttatctccttt--gttgagaaccaaccttccacgaaggtttctcttacacacattgaccccctattcataaattggctgagtaatacgaat |
110 |
Q |
| |
|
|||||||||||||||||||| ||| |||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
10288865 |
gcatagggtttatctcctttttgtttagaaccaaccttccacaaaggtttctcttacacacattgaccccctgttcataaattggctgagtaatacgaat |
10288964 |
T |
|
| Q |
111 |
nnnnnnnnnnnnnntctcaccacggattgtaggttgtggtatattgtcgttggtagctttgccatgcgatgcaacaagtgcttgtgcaaaggaccgcggt |
210 |
Q |
| |
|
|||||||||| |||||||||||||| | |||||| | |||||||| |||||||||||||||| ||||||||| |
|
|
| T |
10288965 |
agagagag------tctcaccacgcattgtaggttgtggcagattgtc--------------cgtgcgatgcgacaagtgcttgtgcaagggaccgcggc |
10289044 |
T |
|
| Q |
211 |
ggtggttgtggtgctggaaccgccgttgtggacggcagtgccatgggagatggtgcagctttggaggatgcagctgccggcaataacaactctgcctgct |
310 |
Q |
| |
|
|| ||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||| ||| ||| |||||||||||||||||||||| |
|
|
| T |
10289045 |
ggcggttgtggtgctggaaccgccgttgtggagggcagtgccatgagagatggtgcagctttggagggcgcaactgtcggcaataacaactctgcctgcc |
10289144 |
T |
|
| Q |
311 |
agtcgaacggcatagcagaaagtct |
335 |
Q |
| |
|
| ||||||||| ||||||||||||| |
|
|
| T |
10289145 |
aatcgaacggcttagcagaaagtct |
10289169 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 16 - 110
Target Start/End: Complemental strand, 20950664 - 20950570
Alignment:
| Q |
16 |
tagggtttatctcctttgttgagaaccaaccttccacgaaggtttctcttacacacattgaccccctattcataaattggctgagtaatacgaat |
110 |
Q |
| |
|
|||||||| |||||||||||||||||||| |||||||| | ||||||||||||||||||||||||| |||||| | | ||||||||||||||| |
|
|
| T |
20950664 |
tagggtttgtctcctttgttgagaaccaatcttccacggatatttctcttacacacattgacccccttttcatacaccgactgagtaatacgaat |
20950570 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 175 - 331
Target Start/End: Complemental strand, 20950511 - 20950355
Alignment:
| Q |
175 |
tgcgatgcaacaagtgcttgtgcaaaggaccgcggtggtggttgtggtgctggaaccgccgttg-tggacggcagtgccatgggagatggtgcagctttg |
273 |
Q |
| |
|
|||||||| || || ||||| |||||||| ||||| ||||||| ||||||| |||||||| || |||| | || |||||||||||| | ||||||||| |
|
|
| T |
20950511 |
tgcgatgccaccagagcttgagcaaaggaacgcggctgtggttgaggtgctgaaaccgccgctgctgga-gtcaaagccatgggagattgcgcagctttg |
20950413 |
T |
|
| Q |
274 |
gaggatgcagctgccggcaataacaactctgcctgctagtcgaacggcatagcagaaa |
331 |
Q |
| |
|
|| | || |||||| ||||| | | |||||||||| | ||||| ||||||||||||| |
|
|
| T |
20950412 |
gatggtgtagctgctggcaaggagagctctgcctgccattcgaaaggcatagcagaaa |
20950355 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 104; Significance: 9e-52; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 27 - 308
Target Start/End: Complemental strand, 9282988 - 9282713
Alignment:
| Q |
27 |
tcctttgttgagaaccaaccttccacgaaggtttctcttacacacattgaccccctattcataaattggctgagtaatacgaatnnnnnnnnnnnnnntc |
126 |
Q |
| |
|
||||||||| |||||||||||||||| ||||||||||||||||||||||||||||| || ||| | || ||||| | ||||||| | |
|
|
| T |
9282988 |
tcctttgttaagaaccaaccttccacaaaggtttctcttacacacattgaccccctgttaatacactgactgagcagtacgaatggagagagc------c |
9282895 |
T |
|
| Q |
127 |
tcaccacggattgtaggttgtggtatattgtcgttggtagctttgccatgcgatgcaacaagtgcttgtgcaaaggaccgcggtggtggttgtggtgctg |
226 |
Q |
| |
|
|||| |||| |||||||||| || | ||| || || || |||| || |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9282894 |
tcacaacgggttgtaggttgcggcagattatcattagtggcttggctgtgcgatgcaacaagtgcttgtgcaaaggaccgcggtggtggttgtggtgctg |
9282795 |
T |
|
| Q |
227 |
gaaccgccgttgtggacggcagtgccatgggagatggtgcagctttggaggatgcagctgccggcaataacaactctgcctg |
308 |
Q |
| |
|
| ||||| | |||||| | |||||||||||||||||| || ||||||||| || ||||| ||||||||||||||||||||| |
|
|
| T |
9282794 |
ggaccgcagctgtggaagacagtgccatgggagatggcacaactttggagggtgtagctgtcggcaataacaactctgcctg |
9282713 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 16 - 110
Target Start/End: Original strand, 38501580 - 38501674
Alignment:
| Q |
16 |
tagggtttatctcctttgttgagaaccaaccttccacgaaggtttctcttacacacattgaccccctattcataaattggctgagtaatacgaat |
110 |
Q |
| |
|
|||||||| |||||||||||||||||||| ||||||| || ||||||||||||||||||||||||| |||||| | ||| |||||||||||||| |
|
|
| T |
38501580 |
tagggtttgtctcctttgttgagaaccaatcttccacagagatttctcttacacacattgacccccttttcatacactggttgagtaatacgaat |
38501674 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 190 - 330
Target Start/End: Original strand, 38501748 - 38501888
Alignment:
| Q |
190 |
gcttgtgcaaaggaccgcggtggtggttgtggtgctggaaccgccgttgtggacggcagtgccatgggagatggtgcagctttggaggatgcagctgccg |
289 |
Q |
| |
|
||||| |||||||| ||||| ||||||| ||||||| || ||||| || || | ||| |||||||||||||| || |||||||| | || |||||||| |
|
|
| T |
38501748 |
gcttgagcaaaggaacgcggctgtggttgaggtgctgaaatcgccgctgctgaagtcagagccatgggagatggcgctgctttggatggtgtagctgccg |
38501847 |
T |
|
| Q |
290 |
gcaataacaactctgcctgctagtcgaacggcatagcagaa |
330 |
Q |
| |
|
|||| | | |||||||||| ||||||| |||||||||||| |
|
|
| T |
38501848 |
gcaaagagagctctgcctgccagtcgaaaggcatagcagaa |
38501888 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0041 (Bit Score: 55; Significance: 2e-22; HSPs: 2)
Name: scaffold0041
Description:
Target: scaffold0041; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 16 - 110
Target Start/End: Original strand, 5107 - 5201
Alignment:
| Q |
16 |
tagggtttatctcctttgttgagaaccaaccttccacgaaggtttctcttacacacattgaccccctattcataaattggctgagtaatacgaat |
110 |
Q |
| |
|
|||||||| ||||||||||||| |||||| |||||||| || ||||||||||||||| ||||||||| |||||| | ||||||||||||||||| |
|
|
| T |
5107 |
tagggtttgtctcctttgttgacaaccaatcttccacggagatttctcttacacacactgacccccttttcatacaccggctgagtaatacgaat |
5201 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0041; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 250 - 331
Target Start/End: Original strand, 5332 - 5413
Alignment:
| Q |
250 |
gccatgggagatggtgcagctttggaggatgcagctgccggcaataacaactctgcctgctagtcgaacggcatagcagaaa |
331 |
Q |
| |
|
|||||||||||||| ||| ||||||| | || |||||||||||| | | |||||| ||| ||||||| ||||||||||||| |
|
|
| T |
5332 |
gccatgggagatggcgcaactttggatggtgtagctgccggcaaagagagctctgcttgccagtcgaaaggcatagcagaaa |
5413 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0111 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: scaffold0111
Description:
Target: scaffold0111; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 25 - 110
Target Start/End: Original strand, 46945 - 47030
Alignment:
| Q |
25 |
tctcctttgttgagaaccaaccttccacgaaggtttctcttacacacattgaccccctattcataaattggctgagtaatacgaat |
110 |
Q |
| |
|
||||||||| |||| ||||||||||||||||||||| ||||||| | |||||||||| |||||| | |||||||||||||||||| |
|
|
| T |
46945 |
tctcctttgctgaggaccaaccttccacgaaggtttatcttacagaagttgacccccttttcatacaatggctgagtaatacgaat |
47030 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 19 - 68
Target Start/End: Original strand, 13582017 - 13582066
Alignment:
| Q |
19 |
ggtttatctcctttgttgagaaccaaccttccacgaaggtttctcttaca |
68 |
Q |
| |
|
||||||||||||||||| || || |||||||| ||||||||||||||||| |
|
|
| T |
13582017 |
ggtttatctcctttgttaagtacaaaccttcctcgaaggtttctcttaca |
13582066 |
T |
|
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