View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3743_low_2 (Length: 1021)

Name: NF3743_low_2
Description: NF3743
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3743_low_2
NF3743_low_2
[»] chr3 (11 HSPs)
chr3 (376-1010)||(38186578-38187229)
chr3 (1-378)||(38185359-38185737)
chr3 (1-79)||(38180690-38180768)
chr3 (681-821)||(38181065-38181210)
chr3 (2-72)||(38170877-38170947)
chr3 (931-974)||(41709199-41709242)
chr3 (929-975)||(38181389-38181435)
chr3 (572-680)||(38180925-38181033)
chr3 (688-763)||(3987011-3987086)
chr3 (929-974)||(16688813-16688858)
chr3 (929-974)||(28860617-28860661)
[»] chr6 (2 HSPs)
chr6 (688-789)||(33083996-33084097)
chr6 (929-974)||(5656573-5656618)
[»] chr7 (5 HSPs)
chr7 (688-796)||(48736142-48736250)
chr7 (688-738)||(36514450-36514500)
chr7 (690-796)||(30200208-30200310)
chr7 (699-736)||(40169640-40169677)
chr7 (929-974)||(41008917-41008962)
[»] chr5 (4 HSPs)
chr5 (688-757)||(42199258-42199325)
chr5 (688-767)||(3097135-3097212)
chr5 (929-974)||(8285233-8285278)
chr5 (743-796)||(16134477-16134530)
[»] chr4 (5 HSPs)
chr4 (684-758)||(10775661-10775735)
chr4 (929-975)||(33614378-33614424)
chr4 (688-763)||(6478911-6478986)
chr4 (929-974)||(13119230-13119275)
chr4 (929-974)||(49448251-49448296)
[»] chr1 (6 HSPs)
chr1 (931-975)||(34835629-34835673)
chr1 (688-797)||(39422285-39422393)
chr1 (688-752)||(18793231-18793295)
chr1 (690-757)||(43423689-43423756)
chr1 (694-796)||(9509249-9509351)
chr1 (929-974)||(7790406-7790451)
[»] chr2 (3 HSPs)
chr2 (705-796)||(9556628-9556719)
chr2 (688-757)||(38434921-38434990)
chr2 (924-972)||(6511051-6511099)
[»] chr8 (4 HSPs)
chr8 (688-763)||(32043554-32043629)
chr8 (688-738)||(25985508-25985558)
chr8 (688-738)||(45419226-45419276)
chr8 (929-974)||(10028782-10028827)


Alignment Details
Target: chr3 (Bit Score: 458; Significance: 0; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 458; E-Value: 0
Query Start/End: Original strand, 376 - 1010
Target Start/End: Original strand, 38186578 - 38187229
Alignment:
Q  376 tttatttttaaggatttcagcttaggatgattgtaatcttgtactaaattcttatggtgagtttaatttggttggatacatgcacaaccaaaagtcatac 475  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     || | ||||||||||||||||||||||||||    
T  38186578 tttatttttaaggatttcagcttaggatgattgtaatcttgtactaaattcttatggtgagttt-----gggttgatacatgcacaaccaaaagtcatac 38186672  T
Q  476 aaaatttgattttgtttataaataaacgcaatcaaattttagcttatcaagttcgac---------------------actataatgtattataaaatat 554  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||                     ||||||||||||||||||| ||    
T  38186673 aaaatttgattttgtttataaataaacgcaaccaaattttagcttatcaagttcgaccggctacatgaattaaacgacactataatgtattataaaaaat 38186772  T
Q  555 cgtgtctttctttaacccatttatttcttgatccctgctaatagtttctcttataatctttttacatatactcctacatttggtgttctgactctcctcc 654  Q
     ||||||||||||||||||||  ||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  38186773 tgtgtctttctttaacccattattttcttgatct-tgctaatagtttctcttataatctttttacatatactcctacatttggtgttctgactttcctcc 38186871  T
Q  655 atatgatctacactcttaatcacatacatctatgtctagtttttaccatcttttctaccataagtgttaccccaattctctctataacgtcgtcatttgt 754  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  38186872 atatgatctacactcttaaccacatacatctatgtctagtttttaccatcttttctaccataagtgttaccccaattctctctatgacgtcgtcatttgt 38186971  T
Q  755 aattatatctcatttaatcatatcatacatccaacacaacattttaattgaattttaagatagattgcgctctcctcttt-nnnnnnnncttcgttcctc 853  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||         |||||||||||    
T  38186972 aattatatctcatttaatcatatcatacatccaacacaacattttaattgaattttaagatagattgcgctctcctctttaaaaaaaaacttcgttcctc 38187071  T
Q  854 aaataaatttctgagtaaaccattaaattgatctatatctttaat-aaaccactttcaaatttgtcacatgttctgttaatatttcaaactagtctctat 952  Q
    |||||||||| ||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38187072 aaataaatttatgagtaaaccattaaattgatctatatttttaataaaaccactttcaaatttgtcacatgttctgttaatatttcaaactagtctctat 38187171  T
Q  953 ctttgtcaaaggtttctcaattttttctaggcaagacgaggcaccgacactcatgatg 1010  Q
    ||||||||||  |||||||||||||||||| |||||||||||||||||||||||||||    
T  38187172 ctttgtcaaaaatttctcaattttttctagacaagacgaggcaccgacactcatgatg 38187229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 1 - 378
Target Start/End: Original strand, 38185359 - 38185737
Alignment:
Q  1 gtgtagtgggtatgtgatgatgaggaagtggtggttttgcgtcatggtaatggtggcttgtgaaaatgcaatagcacgagctaagtgttcttatataagt 100  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  38185359 gtgtagtgggtatgtgatgatgaggaagtggtggttttgcgccatggtaatggtggcttgtgaaaatgcaatagcacaagctaagtgttcttatataagt 38185458  T
Q  101 ggtggctgtggtgacgttcgaggtgaccaaactctatgtggtact-atgtataattggtggtatagaagtgatttggatattatctttttaacattattt 199  Q
    |||| | |||||||||||| |||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  38185459 ggtgaccgtggtgacgttctaggtgaccaaactctatgtgatactcatgtataattggtggtatagaagtgatttggatattatttttttaacattattt 38185558  T
Q  200 tttctaacgcccattattttatggaaactcaaatgtgtcccacgtgtttgaaatagatcacatatgaaatgatgaaatccacgtgagtttgatacaataa 299  Q
    ||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38185559 tttttaacgcccattattttatggaaactcaaatgtgtcccacgtttttgaaatagatcacatatgaaatgatgaaatccacgtgagtttgatacaataa 38185658  T
Q  300 aagaccgtgtgttgtagaaaatatttaaaagaaagagtttttaacttttctctgatgtctaatggtgtaaatttatttt 378  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||    
T  38185659 aagaccgtgtgttgtagaaaatatttaaaagaaagagtttttaacatttctctaatgtctaatggtgtaaatttatttt 38185737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 1 - 79
Target Start/End: Original strand, 38180690 - 38180768
Alignment:
Q  1 gtgtagtgggtatgtgatgatgaggaagtggtggttttgcgtcatggtaatggtggcttgtgaaaatgcaatagcacga 79  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||    
T  38180690 gtgtagtgggtatgtgatgatgaggaagtggtggttttgcgccatggtagtggtggcttgtgaaaatgcaatagcacga 38180768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 58; E-Value: 7e-24
Query Start/End: Original strand, 681 - 821
Target Start/End: Original strand, 38181065 - 38181210
Alignment:
Q  681 catctatgtctagtttttaccatcttttctaccataagtgttaccccaattctctctataacgtcgtcatttgtaattatatctcatttaatcatatcat 780  Q
    |||||| ||||| ||| |||||| |||||||||||||||| ||||| |||| | ||| ||||||||||||||||||||||||||||||||| | ||||||    
T  38181065 catctaagtctaatttctaccat-ttttctaccataagtgataccc-aattttatctttaacgtcgtcatttgtaattatatctcatttaaccttatcat 38181162  T
Q  781 acatccaac-------acaacattttaattgaattttaagatagattg 821  Q
    | |||||||        ||||||||||||||||| |||||||||||||    
T  38181163 atatccaacggccaatgcaacattttaattgaatcttaagatagattg 38181210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 2 - 72
Target Start/End: Original strand, 38170877 - 38170947
Alignment:
Q  2 tgtagtgggtatgtgatgatgaggaagtggtggttttgcgtcatggtaatggtggcttgtgaaaatgcaat 72  Q
    |||||||||||||| ||||||||||||||||||||||||| ||||||| |||||| |||||||||||||||    
T  38170877 tgtagtgggtatgttatgatgaggaagtggtggttttgcgccatggtagtggtggattgtgaaaatgcaat 38170947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 931 - 974
Target Start/End: Original strand, 41709199 - 41709242
Alignment:
Q  931 aatatttcaaactagtctctatctttgtcaaaggtttctcaatt 974  Q
    |||||||||||||| ||||||||||||||||| |||||||||||    
T  41709199 aatatttcaaactaatctctatctttgtcaaaagtttctcaatt 41709242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 929 - 975
Target Start/End: Original strand, 38181389 - 38181435
Alignment:
Q  929 ttaatatttcaaactagtctctatctttgtcaaaggtttctcaattt 975  Q
    ||||||||||||||||||||| |||||| ||||| ||||||||||||    
T  38181389 ttaatatttcaaactagtctccatctttatcaaaagtttctcaattt 38181435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 572 - 680
Target Start/End: Original strand, 38180925 - 38181033
Alignment:
Q  572 catttatttcttgatccctgctaatagtttctcttataatctttttacatatactcctacatttggtgttctgactctcctccatatgatctacactctt 671  Q
    ||||||| ||||||||| || ||||||||| ||||| |||||||||||||  | ||||||  ||| || ||||||||  |||||  |||||||| ||| |    
T  38180925 catttatctcttgatccttgttaatagtttttcttagaatctttttacatccagtcctaccgttgatgatctgactccactccacctgatctactctcct 38181024  T
Q  672 aatcacata 680  Q
    || ||||||    
T  38181025 aaccacata 38181033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 688 - 763
Target Start/End: Complemental strand, 3987086 - 3987011
Alignment:
Q  688 gtctagtttttaccatcttttctaccataagtgttaccccaattctctctataacgtcgtcatttgtaattatatc 763  Q
    ||||||||| ||||||||||||||| ||| ||| |||||||| |||||||  ||  ||||||||| ||||| ||||    
T  3987086 gtctagtttctaccatcttttctactataggtgataccccaactctctctccaatatcgtcatttctaattctatc 3987011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 929 - 974
Target Start/End: Complemental strand, 16688858 - 16688813
Alignment:
Q  929 ttaatatttcaaactagtctctatctttgtcaaaggtttctcaatt 974  Q
    ||||||||||||| || ||||||||||||||||| | |||||||||    
T  16688858 ttaatatttcaaaataatctctatctttgtcaaatgattctcaatt 16688813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 929 - 974
Target Start/End: Complemental strand, 28860661 - 28860617
Alignment:
Q  929 ttaatatttcaaactagtctctatctttgtcaaaggtttctcaatt 974  Q
    |||||||||||||||||||||| | ||||||||| |||||||||||    
T  28860661 ttaatatttcaaactagtctct-tttttgtcaaaagtttctcaatt 28860617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 42; Significance: 0.00000000000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 688 - 789
Target Start/End: Complemental strand, 33084097 - 33083996
Alignment:
Q  688 gtctagtttttaccatcttttctaccataagtgttaccccaattctctctataacgtcgtcatttgtaattatatctcatttaatcatatcatacatcca 787  Q
    ||||||||| ||||||||||||||||||| ||| |||||||| ||||||| |||  ||||||||| ||||| |||| ||| || || || || |||||||    
T  33084097 gtctagtttctaccatcttttctaccataggtgctaccccaactctctctctaatatcgtcatttctaattctatcccatctagtcttaccacacatcca 33083998  T
Q  788 ac 789  Q
    ||    
T  33083997 ac 33083996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 929 - 974
Target Start/End: Complemental strand, 5656618 - 5656573
Alignment:
Q  929 ttaatatttcaaactagtctctatctttgtcaaaggtttctcaatt 974  Q
    ||||||||| |||||||||||| ||||||| ||| |||||||||||    
T  5656618 ttaatattttaaactagtctctgtctttgttaaaagtttctcaatt 5656573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.0000000000001; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 688 - 796
Target Start/End: Original strand, 48736142 - 48736250
Alignment:
Q  688 gtctagtttttaccatcttttctaccataagtgttaccccaattctctctataacgtcgtcatttgtaattatatctcatttaatcatatcatacatcca 787  Q
    ||||||||| | |||||||||||||  || ||| |||||||| ||||||||||| |||||||||| ||||| |||||||| || || || || |||| ||    
T  48736142 gtctagtttctcccatcttttctactgtaggtgctaccccaactctctctataatgtcgtcatttctaattttatctcatctagtcttaccacacattca 48736241  T
Q  788 acacaacat 796  Q
    || ||||||    
T  48736242 acgcaacat 48736250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 688 - 738
Target Start/End: Original strand, 36514450 - 36514500
Alignment:
Q  688 gtctagtttttaccatcttttctaccataagtgttaccccaattctctcta 738  Q
    ||||||||| ||||||||||||||| ||| ||| |||||||| ||||||||    
T  36514450 gtctagtttctaccatcttttctactataggtgctaccccaactctctcta 36514500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 690 - 796
Target Start/End: Original strand, 30200208 - 30200310
Alignment:
Q  690 ctagtttttaccatcttttctaccataagtgttaccccaattctctctataacgtcgtcatttgtaattatatctcatttaatcatatcatacatccaac 789  Q
    |||||||  |||||||||||||| ||| ||||||||| || |||||    || || ||||||| |||| ||||| ||| ||||| || || |||||||||    
T  30200208 ctagtttccaccatcttttctactataggtgttaccctaactctct----aatgttgtcatttctaatcatatcccatctaatcttaccacacatccaac 30200303  T
Q  790 acaacat 796  Q
    |||||||    
T  30200304 acaacat 30200310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 699 - 736
Target Start/End: Complemental strand, 40169677 - 40169640
Alignment:
Q  699 accatcttttctaccataagtgttaccccaattctctc 736  Q
    |||||||||||||| ||||||| |||||||||||||||    
T  40169677 accatcttttctactataagtgctaccccaattctctc 40169640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 929 - 974
Target Start/End: Complemental strand, 41008962 - 41008917
Alignment:
Q  929 ttaatatttcaaactagtctctatctttgtcaaaggtttctcaatt 974  Q
    ||||||||| ||| |||||||||||||||| ||| |||||||||||    
T  41008962 ttaatattttaaaatagtctctatctttgttaaaagtttctcaatt 41008917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.000000000002; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 688 - 757
Target Start/End: Complemental strand, 42199325 - 42199258
Alignment:
Q  688 gtctagtttttaccatcttttctaccataagtgttaccccaattctctctataacgtcgtcatttgtaat 757  Q
    |||||||||  ||||||||||||||  |||||| |||||||||||||||| |||||||||||||| ||||    
T  42199325 gtctagtttccaccatcttttctac--taagtgctaccccaattctctctgtaacgtcgtcatttctaat 42199258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 688 - 767
Target Start/End: Complemental strand, 3097212 - 3097135
Alignment:
Q  688 gtctagtttttaccatcttttctaccataagtgttaccccaattctctctataacgtcgtcatttgtaattatatctcat 767  Q
    ||||||||| || |||||||||||  ||| ||||||||||||  |||||||||| |||||||||| ||||| ||||||||    
T  3097212 gtctagtttctagcatcttttctaatataggtgttaccccaa--ctctctataatgtcgtcatttttaattttatctcat 3097135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 929 - 974
Target Start/End: Complemental strand, 8285278 - 8285233
Alignment:
Q  929 ttaatatttcaaactagtctctatctttgtcaaaggtttctcaatt 974  Q
    ||||||||| ||| |||||| ||||||||||||| |||||||||||    
T  8285278 ttaatattttaaaatagtctatatctttgtcaaaagtttctcaatt 8285233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 743 - 796
Target Start/End: Original strand, 16134477 - 16134530
Alignment:
Q  743 gtcgtcatttgtaattatatctcatttaatcatatcatacatccaacacaacat 796  Q
    |||||||||| ||||| |||||||| || || || |||||||||||||||||||    
T  16134477 gtcgtcatttctaattttatctcatctagtcttaccatacatccaacacaacat 16134530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.000000000002; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 684 - 758
Target Start/End: Original strand, 10775661 - 10775735
Alignment:
Q  684 ctatgtctagtttttaccatcttttctaccataagtgttaccccaattctctctataacgtcgtcatttgtaatt 758  Q
    ||||||||||||| ||||||||||||||| ||| ||||||||||||  |||||| ||| || ||||||| |||||    
T  10775661 ctatgtctagtttctaccatcttttctactataggtgttaccccaacactctctctaatgttgtcatttctaatt 10775735  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 929 - 975
Target Start/End: Complemental strand, 33614424 - 33614378
Alignment:
Q  929 ttaatatttcaaactagtctctatctttgtcaaaggtttctcaattt 975  Q
    |||||||||||||||||||||| |||||| |||| ||||||||||||    
T  33614424 ttaatatttcaaactagtctctgtctttgacaaaagtttctcaattt 33614378  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 688 - 763
Target Start/End: Original strand, 6478911 - 6478986
Alignment:
Q  688 gtctagtttttaccatcttttctaccataagtgttaccccaattctctctataacgtcgtcatttgtaattatatc 763  Q
    ||||||||||||||||||||||||| ||| |||  ||||||| |||| || ||| ||| |||||| ||||| ||||    
T  6478911 gtctagtttttaccatcttttctactataggtgccaccccaactctcactctaatgtcatcatttctaattctatc 6478986  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 929 - 974
Target Start/End: Original strand, 13119230 - 13119275
Alignment:
Q  929 ttaatatttcaaactagtctctatctttgtcaaaggtttctcaatt 974  Q
    ||||||||||||| ||||| || ||||||||||| |||||||||||    
T  13119230 ttaatatttcaaaatagtcgctgtctttgtcaaaagtttctcaatt 13119275  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 929 - 974
Target Start/End: Complemental strand, 49448296 - 49448251
Alignment:
Q  929 ttaatatttcaaactagtctctatctttgtcaaaggtttctcaatt 974  Q
    |||||||||||||||||||| | ||||||||||| |||| ||||||    
T  49448296 ttaatatttcaaactagtctttgtctttgtcaaaagtttatcaatt 49448251  T

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Target: chr1 (Bit Score: 37; Significance: 0.00000000002; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 931 - 975
Target Start/End: Original strand, 34835629 - 34835673
Alignment:
Q  931 aatatttcaaactagtctctatctttgtcaaaggtttctcaattt 975  Q
    |||||||||||||||||||| ||||||||||| ||||||||||||    
T  34835629 aatatttcaaactagtctctgtctttgtcaaaagtttctcaattt 34835673  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 688 - 797
Target Start/End: Original strand, 39422285 - 39422393
Alignment:
Q  688 gtctagtttttaccatcttttctaccataagtgttaccccaattctctctataacgtcgtcatttgtaattatatctcatttaatcatatcatacatcca 787  Q
    ||||||||| ||| ||||||||||| ||| ||||||| |||| ||||| | |||  | ||||||| ||||| |||||||| ||||| || || ||||| |    
T  39422285 gtctagtttctactatcttttctactatatgtgttactccaactctct-tctaatattgtcatttctaattctatctcatataatcctaccacacatcta 39422383  T
Q  788 acacaacatt 797  Q
    ||||||||||    
T  39422384 acacaacatt 39422393  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 688 - 752
Target Start/End: Original strand, 18793231 - 18793295
Alignment:
Q  688 gtctagtttttaccatcttttctaccataagtgttaccccaattctctctataacgtcgtcattt 752  Q
    ||||||||| ||||||||||||||| ||||||  ||||||||  |||||| ||| ||||||||||    
T  18793231 gtctagtttctaccatcttttctacaataagtcctaccccaaccctctctttaatgtcgtcattt 18793295  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 690 - 757
Target Start/End: Complemental strand, 43423756 - 43423689
Alignment:
Q  690 ctagtttttaccatcttttctaccataagtgttaccccaattctctctataacgtcgtcatttgtaat 757  Q
    |||||||  |||||||||||||| ||| |||||||||||| ||||||| ||| || ||||||| ||||    
T  43423756 ctagtttccaccatcttttctactataggtgttaccccaactctctctctaatgtggtcatttctaat 43423689  T

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Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 694 - 796
Target Start/End: Complemental strand, 9509351 - 9509249
Alignment:
Q  694 tttttaccatcttttctaccataagtgttaccccaattctctctataacgtcgtcatttgtaattatatctcatttaatcatatcatacatccaacacaa 793  Q
    ||||||||||||||||||| ||| ||| |||||||| ||||||| ||| |  ||||||| |||| |||||   | || || |||||  ||||||||||||    
T  9509351 tttttaccatcttttctactataggtgctaccccaactctctctctaatggtgtcatttctaatcatatcctgtctagtcttatcactcatccaacacaa 9509252  T
Q  794 cat 796  Q
    |||    
T  9509251 cat 9509249  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 929 - 974
Target Start/End: Complemental strand, 7790451 - 7790406
Alignment:
Q  929 ttaatatttcaaactagtctctatctttgtcaaaggtttctcaatt 974  Q
    ||||||||||||| |||| ||||||||| ||||| |||||||||||    
T  7790451 ttaatatttcaaattagtttctatctttatcaaaagtttctcaatt 7790406  T

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Target: chr2 (Bit Score: 36; Significance: 0.0000000001; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 705 - 796
Target Start/End: Original strand, 9556628 - 9556719
Alignment:
Q  705 ttttctaccataagtgttaccccaattctctctataacgtcgtcatttgtaattatatctcatttaatcatatcatacatccaacacaacat 796  Q
    |||||||| |||||||||||||||| | ||||| ||| || ||||||| |||| ||||| | | ||||| || || ||||||||||||||||    
T  9556628 ttttctactataagtgttaccccaactttctctctaatgttgtcatttctaatcatatcccgtctaatcttaccacacatccaacacaacat 9556719  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 688 - 757
Target Start/End: Complemental strand, 38434990 - 38434921
Alignment:
Q  688 gtctagtttttaccatcttttctaccataagtgttaccccaattctctctataacgtcgtcatttgtaat 757  Q
    |||||||||  |||||||||||||| ||| ||| |||||||||||||||| ||| || ||||||| ||||    
T  38434990 gtctagtttccaccatcttttctactataggtgctaccccaattctctctctaatgttgtcatttctaat 38434921  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 924 - 972
Target Start/End: Original strand, 6511051 - 6511099
Alignment:
Q  924 ttctgttaatatttcaaactagtctctatctttgtcaaaggtttctcaa 972  Q
    |||||||||||||||||| ||||||| ||||||||||||  ||||||||    
T  6511051 ttctgttaatatttcaaaatagtctccatctttgtcaaaaatttctcaa 6511099  T

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Target: chr8 (Bit Score: 32; Significance: 0.00000002; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 688 - 763
Target Start/End: Complemental strand, 32043629 - 32043554
Alignment:
Q  688 gtctagtttttaccatcttttctaccataagtgttaccccaattctctctataacgtcgtcatttgtaattatatc 763  Q
    ||||||||| ||||||||||| ||| ||| ||| |||||||| ||||||| ||| || ||||||| ||||| ||||    
T  32043629 gtctagtttctaccatcttttgtactataggtgataccccaactctctctctaatgttgtcatttctaattctatc 32043554  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 688 - 738
Target Start/End: Complemental strand, 25985558 - 25985508
Alignment:
Q  688 gtctagtttttaccatcttttctaccataagtgttaccccaattctctcta 738  Q
    ||||||||| ||||||||||||||| ||| ||| |||||||| ||||||||    
T  25985558 gtctagtttctaccatcttttctactataggtgctaccccaactctctcta 25985508  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 688 - 738
Target Start/End: Complemental strand, 45419276 - 45419226
Alignment:
Q  688 gtctagtttttaccatcttttctaccataagtgttaccccaattctctcta 738  Q
    ||||| ||| ||||||||||||||| ||| ||| |||||||||||||||||    
T  45419276 gtctattttataccatcttttctactataggtgctaccccaattctctcta 45419226  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 929 - 974
Target Start/End: Original strand, 10028782 - 10028827
Alignment:
Q  929 ttaatatttcaaactagtctctatctttgtcaaaggtttctcaatt 974  Q
    |||||||||||||  |||||||||||||| |||| |||||||||||    
T  10028782 ttaatatttcaaatcagtctctatctttgccaaaagtttctcaatt 10028827  T

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