View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3743_low_20 (Length: 367)
Name: NF3743_low_20
Description: NF3743
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3743_low_20 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 317; Significance: 1e-179; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 12 - 367
Target Start/End: Complemental strand, 7602124 - 7601767
Alignment:
| Q |
12 |
atcatcatcgtaaagaaaacaataacataggtaaaatgtgttgtaatttgtaatatttaacgtcttaaaagaataatttttaaattgaagatacttaaag |
111 |
Q |
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| T |
7602124 |
atcatcatcgtaaagaaaacaataacataggtaaaatgtattgtaatttgtaatatttaacgtcttaaaagaataatttttaaattgaagatacttaaag |
7602025 |
T |
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| Q |
112 |
agtgtttcaaaaacactcgtcaacaaaaccaattataaatttatatcatttcgagatgattatggtaaatttttaccgatcttcatcttaccatacttca |
211 |
Q |
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| T |
7602024 |
agtgtctcaaaaacactcgttaacaaaaccaattataaatttatatcattccgagatgattatggtaaatttttaccgatcttcatcttaccatacttca |
7601925 |
T |
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| Q |
212 |
tctcacttcactcattcaccctcagagtctcaaccggct---acaagtcatctgaagagctcaacatcttaatccaatgctagttgaattgattttagat |
308 |
Q |
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| T |
7601924 |
tctcacttcactcattcaccctcagagtctcaaccggctacaacaagtcatctgaagagctcaacagcttaatccaatgctagttgaattgattttagat |
7601825 |
T |
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| Q |
309 |
ggttaggagttagttatagattggaaacttgtgtaacttgctacacaagttactcaatt |
367 |
Q |
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| T |
7601824 |
ggttaggagttagttatag-ttggaaacttgtgtaacttgctacacaagttactcaatt |
7601767 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 56 - 115
Target Start/End: Complemental strand, 34898991 - 34898932
Alignment:
| Q |
56 |
aatttgtaatatttaacgtcttaaaagaataatttttaaattgaagatacttaaagagtg |
115 |
Q |
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| T |
34898991 |
aatttgtaataattgactttttgaaaaaataatttttaaattgaagatccttaaagagtg |
34898932 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 76 - 116
Target Start/End: Original strand, 167916 - 167956
Alignment:
| Q |
76 |
ttaaaagaataatttttaaattgaagatacttaaagagtgt |
116 |
Q |
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| T |
167916 |
ttaaaagaataatttttaaatttgagatacttaaagagtgt |
167956 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 59 - 137
Target Start/End: Complemental strand, 44592917 - 44592839
Alignment:
| Q |
59 |
ttgtaatatttaacgtcttaaaagaataatttttaaattgaagatacttaaagagtgtttcaaaaacactcgtcaacaa |
137 |
Q |
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| T |
44592917 |
ttgtaatagttaactttttaaaagaataattattaaattttgaatatttaaagagtgttccagaaacactcgttaacaa |
44592839 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 59 - 137
Target Start/End: Original strand, 11720933 - 11721011
Alignment:
| Q |
59 |
ttgtaatatttaacgtcttaaaagaataatttttaaattgaagatacttaaagagtgtttcaaaaacactcgtcaacaa |
137 |
Q |
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| T |
11720933 |
ttgtaatagttgacttcttaaaagaataattgttaaatttaggatgtttaaagagtgactcaaagacactcgttaacaa |
11721011 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 46 - 114
Target Start/End: Complemental strand, 15458485 - 15458417
Alignment:
| Q |
46 |
aatgtgttgtaatttgtaatatttaacgtcttaaaagaataatttttaaattgaagatacttaaagagt |
114 |
Q |
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| T |
15458485 |
aatgtattataatttgtaacatttaacttttttaaagaatactttttaaattggagatctttaaagagt |
15458417 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 56 - 140
Target Start/End: Original strand, 47308526 - 47308609
Alignment:
| Q |
56 |
aatttgtaatatttaacgtcttaaaagaataatttttaaattgaagatacttaaagagtgtttcaaaaacactcgtcaacaaaac |
140 |
Q |
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| T |
47308526 |
aatttgtaatatttaa-gttttgaaggaataatttataaattttagatttttaaagagtgtttcgaagacactcgttagcaaaac |
47308609 |
T |
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