View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3743_low_21 (Length: 356)
Name: NF3743_low_21
Description: NF3743
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3743_low_21 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 144; Significance: 1e-75; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 195 - 338
Target Start/End: Original strand, 32734749 - 32734892
Alignment:
| Q |
195 |
aatttctttccaccatcttcatcatattcatccccaaatgtaaatccaaacctaagtatttttccttttcgttctcttgctatcaaattcccacatagag |
294 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32734749 |
aatttctttccaccatcttcatcatattcatccccaaatgtaaatccaaacctaagtatttttccttttcgttctcttgctatcaaattcccacatagag |
32734848 |
T |
|
| Q |
295 |
acaatgaagcttttctaagtaggctccttttgttagtgacaatc |
338 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32734849 |
acaatgaagcttttctaagtaggctccttttgttagtgacaatc |
32734892 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 140; Significance: 3e-73; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 195 - 338
Target Start/End: Complemental strand, 6139860 - 6139717
Alignment:
| Q |
195 |
aatttctttccaccatcttcatcatattcatccccaaatgtaaatccaaacctaagtatttttccttttcgttctcttgctatcaaattcccacatagag |
294 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6139860 |
aatttctttccaccatcttcatcatattcatccccaaatataaatccaaacctaagtatttttccttttcgttctcttgctatcaaattcccacatagag |
6139761 |
T |
|
| Q |
295 |
acaatgaagcttttctaagtaggctccttttgttagtgacaatc |
338 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6139760 |
acaatgaagcttttctaagtaggctccttttgttagtgacaatc |
6139717 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 74; Significance: 7e-34; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 249 - 338
Target Start/End: Complemental strand, 54901611 - 54901522
Alignment:
| Q |
249 |
agtatttttccttttcgttctcttgctatcaaattcccacatagagacaatgaagcttttctaagtaggctccttttgttagtgacaatc |
338 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||| |||| ||||||||| |
|
|
| T |
54901611 |
agtatttttccttttcgttctctagctatcaaattcccacatagagacaacgaagcttttctaagtaggctccttgtgttggtgacaatc |
54901522 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University