View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3743_low_23 (Length: 337)

Name: NF3743_low_23
Description: NF3743
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3743_low_23
NF3743_low_23
[»] chr4 (12 HSPs)
chr4 (90-316)||(3957646-3957872)
chr4 (1-92)||(3959176-3959267)
chr4 (96-293)||(4007672-4007869)
chr4 (96-197)||(4022830-4022931)
chr4 (95-300)||(3999874-4000079)
chr4 (95-195)||(3984753-3984853)
chr4 (101-195)||(3815439-3815533)
chr4 (96-293)||(3998681-3998878)
chr4 (90-197)||(3922309-3922416)
chr4 (99-197)||(3935669-3935767)
chr4 (99-141)||(3807848-3807890)
chr4 (237-289)||(3935574-3935626)
[»] chr8 (1 HSPs)
chr8 (1-92)||(19167930-19168021)
[»] scaffold0060 (1 HSPs)
scaffold0060 (37-92)||(18706-18761)


Alignment Details
Target: chr4 (Bit Score: 219; Significance: 1e-120; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 90 - 316
Target Start/End: Complemental strand, 3957872 - 3957646
Alignment:
Q  90 gggtgttgtccttgctgtaaccttgattttaaaccttgtctgcttttttgctatgctagttaggtagcgcgaacatggtgggtcgtatatcatgcataca 189  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  3957872 gggtgttgtccttgctgtaaccttgattttaaaccttgtctgcttttttgctatgctagttaggtagcgtgaacatggtgggtcgtatatcatgcataca 3957773  T
Q  190 tgatctgaaaaactagagaaaaaagacctatacatgaagatactgacaccatccttttcttcatcatccacaacatcaattgtagtgatattcaattcaa 289  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3957772 tgatctgaaaaactagagaaaaaatacctatacatgaagatactgacaccatccttttcttcatcatccacaacatcaattgtagtgatattcaattcaa 3957673  T
Q  290 tttggtaacaaaattgggagtccttgg 316  Q
    |||||||||||||||||||||||||||    
T  3957672 tttggtaacaaaattgggagtccttgg 3957646  T

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Target: chr4; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 1 - 92
Target Start/End: Complemental strand, 3959267 - 3959176
Alignment:
Q  1 ggctactgcccatgttgctagagatgaagaccaggtaaacaatcatagtactgctgcaatgaagagtgtaagcatattaagaactcaatggg 92  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3959267 ggctactgcccatgttgctagagatgaagaccaggtaaacaatcatagtactgctgcaatgaagagtgtaagcatattaagaactcaatggg 3959176  T

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Target: chr4; HSP #3
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 96 - 293
Target Start/End: Original strand, 4007672 - 4007869
Alignment:
Q  96 tgtccttgctgtaaccttgattttaaaccttgtctgcttttttgctatgctagttaggtagcgcgaacatggtgggtcgtatatcatgcatacatgatct 195  Q
    ||||||||||||||||||||||||||||||||| || || |||||||  ||||||||||| || |||||| || |||||| ||||||||| |||||||||    
T  4007672 tgtccttgctgtaaccttgattttaaaccttgtatgattctttgctactctagttaggtaccgagaacatcgttggtcgtgtatcatgcacacatgatct 4007771  T
Q  196 gaaaaactagagaaaaaagacctatacatgaagatactgacaccatccttttcttcatcatccacaacatcaattgtagtgatattcaattcaatttg 293  Q
    ||   | ||  || |   | ||||| |||| | |||||||||||||||||||| |||||||||    ||||||||||| |||| || || ||||||||    
T  4007772 gatgcaataccgagaggtgtcctattcatgtaaatactgacaccatccttttcatcatcatccttgtcatcaattgtactgatgttgaactcaatttg 4007869  T

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Target: chr4; HSP #4
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 96 - 197
Target Start/End: Original strand, 4022830 - 4022931
Alignment:
Q  96 tgtccttgctgtaaccttgattttaaaccttgtctgcttttttgctatgctagttaggtagcgcgaacatggtgggtcgtatatcatgcatacatgatct 195  Q
    ||||||||| ||||||||||||||||||||| |||  || ||||||||||||||||||||| | ||| ||||| |||||||||||||||| |||||||||    
T  4022830 tgtccttgccgtaaccttgattttaaaccttctcttattgtttgctatgctagttaggtagtgagaaaatggttggtcgtatatcatgcacacatgatct 4022929  T
Q  196 ga 197  Q
    ||    
T  4022930 ga 4022931  T

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Target: chr4; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 95 - 300
Target Start/End: Original strand, 3999874 - 4000079
Alignment:
Q  95 ttgtccttgctgtaaccttgattttaaaccttgtctgcttttttgctatgctagttaggtagcgcgaacatggtgggtcgtatatcatgcatacatgatc 194  Q
    |||||||||||| |||||||||||| |||||||| || ||||| ||||| |||||||||||  | ||| ||||||||||||||||||| || ||||||||    
T  3999874 ttgtccttgctgcaaccttgattttgaaccttgtatgatttttcgctattctagttaggtactgagaaaatggtgggtcgtatatcatacacacatgatc 3999973  T
Q  195 tgaaaaactagagaaaaaagacctatacatgaagatactgacaccatccttttcttcatcatccacaacatcaattgtagtgatattcaattcaatttgg 294  Q
    ||||  | || | | |  |  |  || |||| | |||  |||||||||||||||  ||||| || |||||||||||| |||||| |||||| |||||| |    
T  3999974 tgaattattacaaacacgatccacatccatgtatatatcgacaccatccttttcaccatcaccctcaacatcaattgcagtgatgttcaatacaattttg 4000073  T
Q  295 taacaa 300  Q
    ||||||    
T  4000074 taacaa 4000079  T

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Target: chr4; HSP #6
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 95 - 195
Target Start/End: Original strand, 3984753 - 3984853
Alignment:
Q  95 ttgtccttgctgtaaccttgattttaaaccttgtctgcttttttgctatgctagttaggtagcgcgaacatggtgggtcgtatatcatgcatacatgatc 194  Q
    ||||||||||||||||||||||||||| |  ||||||  |||| |||||||| ||||||||| | ||||||||| |||||||||||||||| ||||||||    
T  3984753 ttgtccttgctgtaaccttgattttaacctgtgtctgacttttggctatgctggttaggtagtgagaacatggttggtcgtatatcatgcacacatgatc 3984852  T
Q  195 t 195  Q
    |    
T  3984853 t 3984853  T

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Target: chr4; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 101 - 195
Target Start/End: Original strand, 3815439 - 3815533
Alignment:
Q  101 ttgctgtaaccttgattttaaaccttgtctgcttttttgctatgctagttaggtagcgcgaacatggtgggtcgtatatcatgcatacatgatct 195  Q
    |||||||||||||||||||||| |||||||| ||||||||||| ||||||||||| |  |||||| || |||| | |||||||||||||||||||    
T  3815439 ttgctgtaaccttgattttaaagcttgtctgattttttgctattctagttaggtacccagaacatcgttggtcctgtatcatgcatacatgatct 3815533  T

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Target: chr4; HSP #8
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 96 - 293
Target Start/End: Original strand, 3998681 - 3998878
Alignment:
Q  96 tgtccttgctgtaaccttgattttaaaccttgtctgcttttttgctatgctagttaggtagcgcgaacatggtgggtcgtatatcatgcatacatgatct 195  Q
    |||||||||||||||||| |||||||||||||| || || |||||||  ||||||||||| || |||||| || ||| || ||||||||| |||||||||    
T  3998681 tgtccttgctgtaaccttaattttaaaccttgtatgattctttgctacactagttaggtaccgagaacattgttggttgtgtatcatgcacacatgatct 3998780  T
Q  196 gaaaaactagagaaaaaagacctatacatgaagatactgacaccatccttttcttcatcatccacaacatcaattgtagtgatattcaattcaatttg 293  Q
    ||   | ||  || |   | ||||| |||| | ||||||||||| |||||||| |||||||||    |||||||||||||||| || || ||||||||    
T  3998781 gatgcaatactgagaggtgtcctattcatgtaaatactgacaccgtccttttcatcatcatccttgtcatcaattgtagtgatgttgaactcaatttg 3998878  T

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Target: chr4; HSP #9
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 90 - 197
Target Start/End: Complemental strand, 3922416 - 3922309
Alignment:
Q  90 gggtgttgtccttgctgtaaccttgattttaaaccttgtctgcttttttgctatgctagttaggtagcgcgaacatggtgggtcgtatatcatgcataca 189  Q
    |||| |||||| ||||||||||||||||||||| |||||||| ||||||||||| ||||||||||   | ||||| ||| ||||||| ||||| || |||    
T  3922416 gggtattgtccatgctgtaaccttgattttaaagcttgtctgattttttgctattctagttaggtgctgagaacaaggttggtcgtaaatcatacacaca 3922317  T
Q  190 tgatctga 197  Q
    ||||||||    
T  3922316 tgatctga 3922309  T

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Target: chr4; HSP #10
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 99 - 197
Target Start/End: Complemental strand, 3935767 - 3935669
Alignment:
Q  99 ccttgctgtaaccttgattttaaaccttgtctgcttttttgctatgctagttaggtagcgcgaacatggtgggtcgtatatcatgcatacatgatctga 197  Q
    |||||||||||||||||||||||| |||||||| ||||||||||| |||||||||||  | || || ||| ||||||| ||||| || |||||||||||    
T  3935767 ccttgctgtaaccttgattttaaagcttgtctgattttttgctattctagttaggtactgagagcaaggttggtcgtaaatcatacacacatgatctga 3935669  T

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Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 99 - 141
Target Start/End: Original strand, 3807848 - 3807890
Alignment:
Q  99 ccttgctgtaaccttgattttaaaccttgtctgcttttttgct 141  Q
    |||| |||||||||||||||||||||||| ||| |||||||||    
T  3807848 ccttactgtaaccttgattttaaaccttgcctgattttttgct 3807890  T

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Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 237 - 289
Target Start/End: Complemental strand, 3935626 - 3935574
Alignment:
Q  237 accatccttttcttcatcatccacaacatcaattgtagtgatattcaattcaa 289  Q
    ||||||||||||  ||||| || ||||||||||||||||||| || |||||||    
T  3935626 accatccttttcaccatcaccctcaacatcaattgtagtgatgttgaattcaa 3935574  T

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Target: chr8 (Bit Score: 72; Significance: 1e-32; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 1 - 92
Target Start/End: Original strand, 19167930 - 19168021
Alignment:
Q  1 ggctactgcccatgttgctagagatgaagaccaggtaaacaatcatagtactgctgcaatgaagagtgtaagcatattaagaactcaatggg 92  Q
    ||||| |||||||||||||||| ||||||| ||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||    
T  19167930 ggctattgcccatgttgctagatatgaagatcaggtaaacaatcctagtactgctgcaatgaagagtgttagcatattaagaactcaatggg 19168021  T

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Target: scaffold0060 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0060
Description:

Target: scaffold0060; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 37 - 92
Target Start/End: Original strand, 18706 - 18761
Alignment:
Q  37 aaacaatcatagtactgctgcaatgaagagtgtaagcatattaagaactcaatggg 92  Q
    |||||||| |||||||||| ||||||||||||||||||||||||||||||||||||    
T  18706 aaacaatcctagtactgcttcaatgaagagtgtaagcatattaagaactcaatggg 18761  T

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