View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3743_low_28 (Length: 320)
Name: NF3743_low_28
Description: NF3743
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3743_low_28 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 287; Significance: 1e-161; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 1 - 304
Target Start/End: Original strand, 10970311 - 10970616
Alignment:
| Q |
1 |
tgaacaacttactcgattaaaatacaggaacaacatcttttcctcatctccagcgcttcttctgaaaatttattagaaaatggtttataaacaagtgaag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10970311 |
tgaacaacttactcgattaaaatacaggaacaacatcttttcctcatctccagcgcttcttctgaaaatttattagaaaatggtttataaacaagtgaag |
10970410 |
T |
|
| Q |
101 |
cagcatatgtatttgttcatataaatttccatttcagtactaaagatgtttcaagtattcaattacattagcgattctagattctacacagtcaggaaaa |
200 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10970411 |
cagcataggtatttgttcatataaatttccatttcagtactaaagatgtttcaagtattcaattacattagcgattctagattctacacagtcaggaaaa |
10970510 |
T |
|
| Q |
201 |
gcatgcagt--tgagatcccaactgttaattgaagatcagatgacttgtattacgagatgtatattttaaagtggatttggtaaaatcataatacaagtc |
298 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10970511 |
gcatgcagtcaagagatcccaactgttaattgaagatcagatgacttgtattacgagatgtatattttaaagtggatttggtaaaatcataatacaagtc |
10970610 |
T |
|
| Q |
299 |
taatct |
304 |
Q |
| |
|
|||||| |
|
|
| T |
10970611 |
taatct |
10970616 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University