View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3743_low_29 (Length: 315)
Name: NF3743_low_29
Description: NF3743
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3743_low_29 |
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Alignment Details
Target: chr4 (Bit Score: 207; Significance: 1e-113; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 16 - 297
Target Start/End: Complemental strand, 9137727 - 9137448
Alignment:
| Q |
16 |
aatatgtgatctcagaaccattctcagatttgctttgttaatttatttctacttgttagtgtttttgatgctatttactttttctactgaagtcatatct |
115 |
Q |
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| T |
9137727 |
aatatgtgatctcagaaccattctcagatttgctttgttaatttacttctacttgttagtgtttttgatgctattt--tttacttactgaagtcatatat |
9137630 |
T |
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| Q |
116 |
ctgttatctctataactaattatgactaatagaaaattgtaacatatatctgtcagaaaatttacacctacttcgttcttttaattcttttcttttgtaa |
215 |
Q |
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| T |
9137629 |
ctctcatctctataactaattatgactaatagaaaattgtaactaatatcattgagaaaatttacacctacttcgttcttttaattcttttcttttgtaa |
9137530 |
T |
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| Q |
216 |
atttataatttgcaatctcaatttacattgtgagtgcatggcatcgtgatgggtcaatcgtaaactatatagtatgtgtgtg |
297 |
Q |
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| T |
9137529 |
atttataatttaaattctcaatttacattgtgagtgcatggcatcgtgatggctcaatcgtaaactatatagtatgtgtgtg |
9137448 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 121 - 224
Target Start/End: Complemental strand, 8040412 - 8040306
Alignment:
| Q |
121 |
atctctataactaattatgactaatagaaaa-ttgtaacatatatctgtcagaaaatttacacctacttcgttcttttaattcttttcttttgta--aat |
217 |
Q |
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|||||| |||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||| ||||||||||||||| |||||||| ||| |
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| T |
8040412 |
atctctctaactaattatgactaatagaaaaattgtaacatatatctgtgtgaaaatttacacctacttctttcttttaattctttacttttgtagtaat |
8040313 |
T |
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| Q |
218 |
ttataat |
224 |
Q |
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||||||| |
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| T |
8040312 |
ttataat |
8040306 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 122 - 267
Target Start/End: Complemental strand, 31326473 - 31326331
Alignment:
| Q |
122 |
tctctataactaattatgactaatag-aaaattgtaacatatatctgtcagaaaatttacacctacttcgttcttttaattcttttcttttgtaaattta |
220 |
Q |
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|||| ||||||||| ||||||||||| ||||||||| | |||||||| || ||||||||||||||||| ||||||| | | |||||||| ||| || | |
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| T |
31326473 |
tctcaataactaatcatgactaatagaaaaattgta--aaatatctgtgag-aaatttacacctacttctttcttttta-tattttctttcataacttca |
31326378 |
T |
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| Q |
221 |
taatttgcaatctcaatttacattgtgagtgcatggcatcgtgatgg |
267 |
Q |
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| T |
31326377 |
taatttataatgtcgatttacattgcaagggcatggcatcttgatgg |
31326331 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 122 - 267
Target Start/End: Complemental strand, 31373922 - 31373780
Alignment:
| Q |
122 |
tctctataactaattatgactaatagaaaa-ttgtaacatatatctgtcagaaaatttacacctacttcgttcttttaattcttttcttttgtaaattta |
220 |
Q |
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|||| |||||||| ||||||||||||||| |||||| |||| |||| ||||| |||||||||||||| ||||||| | | |||||||| ||| || | |
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| T |
31373922 |
tctcaataactaaacatgactaatagaaaaattgtaaaatat--ctgtgagaaa-tttacacctacttctttcttttta-tattttctttcataacttca |
31373827 |
T |
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| Q |
221 |
taatttgcaatctcaatttacattgtgagtgcatggcatcgtgatgg |
267 |
Q |
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|||||| ||| || |||||||||| || |||||||||| |||||| |
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| T |
31373826 |
taatttataatgtcgatttacattgcaagggcatggcatcttgatgg |
31373780 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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