View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3743_low_3 (Length: 960)
Name: NF3743_low_3
Description: NF3743
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3743_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 682; Significance: 0; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 682; E-Value: 0
Query Start/End: Original strand, 213 - 944
Target Start/End: Complemental strand, 6855059 - 6854325
Alignment:
| Q |
213 |
gatatagtacaagcacaaaattcattagagttgtttcctttgttaattttgtataaataagggaagaaaatgatagagagaaccatctttgaacgttgta |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6855059 |
gatatagtacaagcacaaaattcattagagttgtttcctttgttaattttgtataaataagggaagaaaatgatagagagaaccatctttgaacgttgta |
6854960 |
T |
|
| Q |
313 |
gtatttcctaatgcgaagggaacccttggaggggatgttttctcctattcgatctatttcttaaatcaggtgttctttcttggaaattcaaatcaagctt |
412 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6854959 |
gtatttcctaatgtgaagggaacccttggaggggatgttttctcctattcgatctatttcttaaatcaggtgttctttcttggaaattcaaatcaagctt |
6854860 |
T |
|
| Q |
413 |
cctaacatctaccactta---gtcaagagctggcatgtgcttgacaagtaggttttggctgatgaatctctctgagaaagaatatgtcaagctccatatg |
509 |
Q |
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|||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6854859 |
cctaacatctaccacttattagtcaagagctggtatgtgcttgacaagtaggttttggctgatgaatctctctgagaaagaatatgtcaagctccatatg |
6854760 |
T |
|
| Q |
510 |
ttttgttttggcatgtagaaatggggcgtcggatagaacaacaatgctaacattgttgctgagcagcgctatggctaccatttttgaggtgttgaacctc |
609 |
Q |
| |
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|||||||||||||||||||| |||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6854759 |
ttttgttttggcatgtagaa-tggggcgttggatagaacaagaatgctaacattgttgctgagcagcgctatggctaccatttttgaggtgttgaacctc |
6854661 |
T |
|
| Q |
610 |
tatagccaaaaaatatgccaaattctaaagttgtttgagcgtaaactaacttttaatctttggtaatgtgttgctgaatgtggggaagtgaattgccagt |
709 |
Q |
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| T |
6854660 |
tatagccaaaaaatatgccaaattctaaagttgtttgagcgtaaactaacttttaatctttggtaatgtgttgctgaatgtggggaagtgaattgccagt |
6854561 |
T |
|
| Q |
710 |
agctaagatgtaatgattgtaatctacatagactaacatcactatagtgtagtaaagagtgataagtgtaaacagaaaaaggttatgtctgcttggtgta |
809 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
6854560 |
agctaagatgtaatgattgtaatctacatagactaacatcactatagtgtagtaaagagtgataagtgtaaacaaaaaaaggttatgtctgcttggtgta |
6854461 |
T |
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| Q |
810 |
aaatgt-gtttcttgatgcagaagttaggtgtttaaacaaaattctttgagctagattgaggccatagattgctttatacaatttgcacactagagattt |
908 |
Q |
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| T |
6854460 |
aaatgtggtttcttgatgcagaagttaggtgtttaaacaaaattctttgagctagattgaggccataaattgctttatacaatttgcacactagagattt |
6854361 |
T |
|
| Q |
909 |
atcttttaatccaaagcctaggaactaggatgttac |
944 |
Q |
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| T |
6854360 |
atcttttaatccaaagcctaggaactaggatgttac |
6854325 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 160; E-Value: 9e-85
Query Start/End: Original strand, 1 - 160
Target Start/End: Complemental strand, 6855216 - 6855057
Alignment:
| Q |
1 |
cctagaagcagaaggattgtaaaatttgcatatggtggtgttttatctggtggtgctgttcgagaaagagtcattcgagctttcttggttgaaaagcaaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6855216 |
cctagaagcagaaggattgtaaaatttgcatatggtggtgttttatctggtggtgctgttcgagaaagagtcattcgagctttcttggttgaaaagcaaa |
6855117 |
T |
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| Q |
101 |
agatagtcaagaatgttttgaagatccaaaagacaaaggaaaaacaagctttgaagggat |
160 |
Q |
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| T |
6855116 |
agatagtcaagaatgttttgaagatccaaaagacaaaggaaaaacaagctttgaagggat |
6855057 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 142; E-Value: 5e-74
Query Start/End: Original strand, 27 - 262
Target Start/End: Original strand, 6823024 - 6823258
Alignment:
| Q |
27 |
tgcatatggtggtgttttatctggtggtgctgttcgagaaagagtcattcgagctttcttggttgaaaagcaaaagatagtcaagaatgttttgaagatc |
126 |
Q |
| |
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||||||| || || |||||| ||| || |||||| |||||||| ||||||||||||||||||||||| || |||||||||||||||||||| |||||||| |
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| T |
6823024 |
tgcatattgtagtattttatgtggaggcgctgttagagaaagaatcattcgagctttcttggttgaagagaaaaagatagtcaagaatgttctgaagatc |
6823123 |
T |
|
| Q |
127 |
caaaagacaaaggaaaaacaagctttgaagggatgaattttatgaaaggagatacatatctttttggaggagttttaggtttgagtga-tatagtacaag |
225 |
Q |
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| T |
6823124 |
cgaaagagaaaggaaaaacaagctttgaagggatgaattttatgaaaggag--acatatcttttcagaggaattttaggtttgagtgattatagtacaag |
6823221 |
T |
|
| Q |
226 |
cacaaaattcattagagttgtttcctttgttaatttt |
262 |
Q |
| |
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||||||||| |||||||||||| ||||||| |||||| |
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| T |
6823222 |
cacaaaatttattagagttgttccctttgtgaatttt |
6823258 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 98; E-Value: 9e-48
Query Start/End: Original strand, 79 - 247
Target Start/End: Original strand, 24245690 - 24245859
Alignment:
| Q |
79 |
gctttcttggttgaaaagcaaaagatagtcaagaatgttttgaagatccaaaagacaaaggaaaaacaagctttgaagggatgaattttatgaaaggaga |
178 |
Q |
| |
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||||||||||||||| |||||||||| |||||||| || |||||||||||||||||||||||||| |||||||||||||| | | ||| || ||| |||| |
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| T |
24245690 |
gctttcttggttgaagagcaaaagatcgtcaagaaagtcttgaagatccaaaagacaaaggaaaagcaagctttgaagggttaagtttcattaaacgaga |
24245789 |
T |
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| Q |
179 |
tacatatctttttggaggagttttaggtttgagtga-tatagtacaagcacaaaattcattagagttgtt |
247 |
Q |
| |
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|| | ||||||||||||||||||||||||||||||| ||||||| |||||||||||| ||||||| |||| |
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| T |
24245790 |
taaagatctttttggaggagttttaggtttgagtgattatagtaaaagcacaaaatttattagagctgtt |
24245859 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 411 - 574
Target Start/End: Original strand, 6823549 - 6823712
Alignment:
| Q |
411 |
ttcctaacatctaccacttagtcaagagctggcatgtgcttgacaagtaggttttggctgatgaatctctctgagaaagaatatgtcaagctccatatgt |
510 |
Q |
| |
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|||||||| ||||||| || |||||||||||||||||||||||||| || |||| ||||||||| ||||||| || ||||||| |||| |||| |||||| |
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| T |
6823549 |
ttcctaacttctaccagttggtcaagagctggcatgtgcttgacaattatgtttcggctgatgactctctctaagcaagaataggtcaggctctatatgt |
6823648 |
T |
|
| Q |
511 |
tttgttttggcatgtagaaatggggcgtcggatagaacaacaatgctaacattgttgctgagca |
574 |
Q |
| |
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|| |||| | ||||||||| ||| ||| ||||||||||||||||||||||||||||| ||||| |
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| T |
6823649 |
ttggtttcgacatgtagaatggggtcgtaggatagaacaacaatgctaacattgttgcagagca |
6823712 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 872 - 928
Target Start/End: Original strand, 6824196 - 6824252
Alignment:
| Q |
872 |
catagattgctttatacaatttgcacactagagatttatcttttaatccaaagccta |
928 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
6824196 |
catagattgctttatacaatttgcacactagagatttatcttctaatccaaagccta |
6824252 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 79 - 149
Target Start/End: Complemental strand, 2418914 - 2418844
Alignment:
| Q |
79 |
gctttcttggttgaaaagcaaaagatagtcaagaatgttttgaagatccaaaagacaaaggaaaaacaagc |
149 |
Q |
| |
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|||||| | |||||| ||||||| ||||| ||||| |||||||||||||| || ||||| ||||| ||||| |
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| T |
2418914 |
gctttccttgttgaagagcaaaaaatagttaagaaagttttgaagatccagaaaacaaaagaaaagcaagc |
2418844 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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