View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3743_low_31 (Length: 308)
Name: NF3743_low_31
Description: NF3743
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3743_low_31 |
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Alignment Details
Target: chr3 (Bit Score: 262; Significance: 1e-146; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 11 - 292
Target Start/End: Complemental strand, 51482833 - 51482552
Alignment:
| Q |
11 |
cacagaatctaggagttccggcaagccagcactgctgttatctgctgcagtgggtggctctgatcagataactccactaaaatactaccctggtcaagat |
110 |
Q |
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| T |
51482833 |
cacagaatctaggagttccggcaagccagcactgctgttatctgctgcagtgggtggctctgatcagataactccattgaagtactaccctggtcaagat |
51482734 |
T |
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| Q |
111 |
gttgcaaacaacttggattgggttaatgtaatgacttatgacctttacatctcagatacaaatccaactcaaacacaaccacccgctcctttgaaaaacc |
210 |
Q |
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| T |
51482733 |
gttgcaaacaacttggattgggttaatgtaatgacctatgacctttacatctcagatacaaatccaactcaaacacaaccacccgctcctttgaaaaacc |
51482634 |
T |
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| Q |
211 |
caactggcttgttcagtgcagatgaaggtatcaataaatgggtagggttaggtgtgccaaaaagcaaacttgcacttggttt |
292 |
Q |
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| T |
51482633 |
caactggcttgttcagtgcagatgaaggtatcaataaatgggtagggttaggtgtgccaaaaaacaaacttgcacttggttt |
51482552 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 13 - 292
Target Start/End: Complemental strand, 51467921 - 51467642
Alignment:
| Q |
13 |
cagaatctaggagttccggcaagccagcactgctgttatctgctgcagtgggtggctctgatcagataactccactaaaatactaccctggtcaagatgt |
112 |
Q |
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|||| ||||||||||||| |||||| | |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51467921 |
cagagtctaggagttccgacaagccggaactgttgttatctgctgcagtgggtggctctgatcagataactccactaaaatactaccctggtcaagatgt |
51467822 |
T |
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| Q |
113 |
tgcaaacaacttggattgggttaatgtaatgacttatgacctttacatctcagatacaaatccaactcaaacacaaccacccgctcctttgaaaaaccca |
212 |
Q |
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| T |
51467821 |
tgcaaacaacttggattgggttaatgtaatgacctatgacctttacatctcagatataaatccaactcaaacacaaccacccgctcctttgaaaaaccca |
51467722 |
T |
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| Q |
213 |
actggcttgttcagtgcagatgaaggtatcaataaatgggtagggttaggtgtgccaaaaagcaaacttgcacttggttt |
292 |
Q |
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|||||| || ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51467721 |
actggccaatttagtgcagatgaaggtatcacaaaatgggtagggttaggtgtgccaaaaagcaaacttgcacttggttt |
51467642 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 127; Significance: 1e-65; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 18 - 280
Target Start/End: Complemental strand, 48424334 - 48424072
Alignment:
| Q |
18 |
tctaggagttccggcaagccagcactgctgttatctgctgcagtgggtggctctgatcagataactccactaaaatactaccctggtcaagatgttgcaa |
117 |
Q |
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||||| ||||| |||||||| ||||||||||||||||||| |||||||||||||||||||| | | | |||||||||| ||||| ||| |||||| |
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| T |
48424334 |
tctagcagttctggcaagccgacactgctgttatctgctgccgtgggtggctctgatcagatcatctctttggaatactacccaggtcaggatattgcaa |
48424235 |
T |
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| Q |
118 |
acaacttggattgggttaatgtaatgacttatgacctttacatctcagatacaaatccaactcaaacacaaccacccgctcctttgaaaaacccaactgg |
217 |
Q |
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|||||||||||||||| |||||||||||||||||||||| ||||||||||| ||| |||||||||||||||||| |||||||||||||||||||| || |
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| T |
48424234 |
acaacttggattgggtcaatgtaatgacttatgaccttttcatctcagataggtatcaaactcaaacacaaccacctgctcctttgaaaaacccaacagg |
48424135 |
T |
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| Q |
218 |
cttgttcagtgcagatgaaggtatcaataaatgggtagggttaggtgtgccaaaaagcaaact |
280 |
Q |
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| ||||||| |||||||||||||| |||||| | |||||||| || |||||||||||||| |
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| T |
48424134 |
ccaattcagtgtagatgaaggtatcacaaaatggattgggttaggagttccaaaaagcaaact |
48424072 |
T |
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