View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3743_low_34 (Length: 265)
Name: NF3743_low_34
Description: NF3743
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3743_low_34 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 246
Target Start/End: Original strand, 32015024 - 32015270
Alignment:
| Q |
1 |
agagaagttgtgcagcatcaattagtcagcacagtttggagaaaaccaatacaaggtgctataaatgtaagttccatgcttcgttttctagatggagaaa |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||| |
|
|
| T |
32015024 |
agagaagttgtgcagcatcaattagtcagcacagtttggagaaaaccaatacaaggtgctataaatgtatgttgcatgcttcgttttctagatggagaaa |
32015123 |
T |
|
| Q |
101 |
caatgtttgctacattcatccgggacaattattttgcaacgagaagcacaaatgtggctcagtgcaaagcattgttcttctccaaatagaactagaagta |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| | |
|
|
| T |
32015124 |
caatgtttgctacattcatccgggacaattattttgcaacgagaagcacaaatgtggctcagcgcaaagcattgttcttctccaaatagaactagaagca |
32015223 |
T |
|
| Q |
201 |
gaagtctagaagcgacttgttatgctttg-gttggcaacccttcttc |
246 |
Q |
| |
|
||||||||||||| ||||||||||||||| ||||||||||||||||| |
|
|
| T |
32015224 |
gaagtctagaagcaacttgttatgctttgagttggcaacccttcttc |
32015270 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University