View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3743_low_35 (Length: 262)

Name: NF3743_low_35
Description: NF3743
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3743_low_35
NF3743_low_35
[»] chr4 (8 HSPs)
chr4 (6-143)||(5599025-5599163)
chr4 (6-146)||(4851811-4851952)
chr4 (4-147)||(2895312-2895456)
chr4 (4-146)||(5908268-5908411)
chr4 (67-148)||(6735977-6736058)
chr4 (67-143)||(13701736-13701813)
chr4 (67-143)||(13712229-13712306)
chr4 (102-143)||(5579377-5579418)
[»] chr6 (9 HSPs)
chr6 (4-143)||(33301297-33301437)
chr6 (166-230)||(13929861-13929925)
chr6 (39-138)||(31113832-31113933)
chr6 (32-143)||(6405888-6406001)
chr6 (101-146)||(8706833-8706878)
chr6 (67-143)||(5131558-5131636)
chr6 (92-143)||(34256453-34256505)
chr6 (67-143)||(8519050-8519127)
chr6 (67-143)||(28144160-28144237)
[»] chr2 (2 HSPs)
chr2 (4-139)||(2696618-2696754)
chr2 (70-143)||(31314417-31314491)
[»] chr7 (7 HSPs)
chr7 (4-146)||(48477170-48477313)
chr7 (4-146)||(42786670-42786813)
chr7 (67-143)||(21959444-21959521)
chr7 (67-146)||(4340314-4340394)
chr7 (67-146)||(3080627-3080707)
chr7 (67-146)||(3079261-3079341)
chr7 (101-143)||(19802018-19802060)
[»] chr1 (7 HSPs)
chr1 (6-146)||(14115716-14115857)
chr1 (67-146)||(15088031-15088111)
chr1 (67-146)||(22207076-22207156)
chr1 (67-146)||(22210639-22210719)
chr1 (67-146)||(22219389-22219469)
chr1 (67-144)||(7898768-7898847)
chr1 (67-143)||(51843718-51843795)
[»] scaffold0046 (1 HSPs)
scaffold0046 (7-143)||(89614-89751)
[»] chr8 (3 HSPs)
chr8 (67-143)||(20811254-20811331)
chr8 (67-143)||(4844657-4844732)
chr8 (92-143)||(5556895-5556947)
[»] chr3 (7 HSPs)
chr3 (68-143)||(2747311-2747387)
chr3 (67-149)||(5835052-5835135)
chr3 (70-143)||(14521885-14521959)
chr3 (51-143)||(28034112-28034206)
chr3 (67-146)||(19440499-19440579)
chr3 (68-123)||(37489166-37489222)
chr3 (92-143)||(18110863-18110915)
[»] scaffold0158 (2 HSPs)
scaffold0158 (70-143)||(230-304)
scaffold0158 (92-143)||(37709-37761)
[»] scaffold0043 (1 HSPs)
scaffold0043 (67-143)||(70367-70444)
[»] chr5 (1 HSPs)
chr5 (92-143)||(41527650-41527702)
[»] scaffold0060 (1 HSPs)
scaffold0060 (101-138)||(45458-45495)
[»] scaffold0018 (1 HSPs)
scaffold0018 (67-146)||(66229-66310)


Alignment Details
Target: chr4 (Bit Score: 123; Significance: 3e-63; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 6 - 143
Target Start/End: Complemental strand, 5599163 - 5599025
Alignment:
Q  6 agtggaactatttctgaggtaataggcgagaaattctatgatttgttcagagaatatttatttattgtaacttcaatgtatccgacgccaagttt-acac 104  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||    
T  5599163 agtggaactatttctgaggtaataggcgagaaattctatgatttgttcagagaatatttctttattgtaacttcaatgtatccgacgccaagtttaacac 5599064  T
Q  105 acatgctagatatcctaggtgttttctagtaggggtgtt 143  Q
    ||||||||||||||||||||| |||||||||||||||||    
T  5599063 acatgctagatatcctaggtgatttctagtaggggtgtt 5599025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 6 - 146
Target Start/End: Complemental strand, 4851952 - 4851811
Alignment:
Q  6 agtggaactatttctgaggtaataggcgagaaattctatgatttgttcagagaatatttatttattgtaacttcaatgtatccgacgccaagttt-acac 104  Q
    |||||||||||||||||||||| | ||||||||||| ||||||||||||||||||||||||||||||||| || ||||||||||||||||||||| ||||    
T  4851952 agtggaactatttctgaggtaacacgcgagaaattcaatgatttgttcagagaatatttatttattgtaattttaatgtatccgacgccaagtttaacac 4851853  T
Q  105 acatgctagatatcctaggtgttttctagtaggggtgtttca 146  Q
    ||||||||||||||||||||| ||||||||||||||||||||    
T  4851852 acatgctagatatcctaggtgatttctagtaggggtgtttca 4851811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 4 - 147
Target Start/End: Original strand, 2895312 - 2895456
Alignment:
Q  4 tcagtggaactatttctgaggtaataggcgagaaattctatgatttgttcagagaatatttatttattgtaacttcaatgtatccgacgccaagttt-ac 102  Q
    |||||||||||||||  |||||||||||| ||||||||||||||||||||||||||||| |||||||||||| || ||||||||||||||||||||| ||    
T  2895312 tcagtggaactattttggaggtaataggcaagaaattctatgatttgttcagagaatatctatttattgtaattttaatgtatccgacgccaagtttaac 2895411  T
Q  103 acacatgctagatatcctaggtgttttctagtaggggtgtttcag 147  Q
    ||||||||||||||||||||||| |||||||||||||||||||||    
T  2895412 acacatgctagatatcctaggtgatttctagtaggggtgtttcag 2895456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 4 - 146
Target Start/End: Complemental strand, 5908411 - 5908268
Alignment:
Q  4 tcagtggaactatttctgaggtaataggcgagaaattctatgatttgttcagagaatatttatttattgtaacttcaatgtatccgacgccaagttt-ac 102  Q
    |||||||||||||||| ||||||| | || ||||||||||||||||||||||||||||| |||||||| ||| || ||||||||||||||||||||| ||    
T  5908411 tcagtggaactatttcggaggtaacatgcaagaaattctatgatttgttcagagaatatctatttattataattttaatgtatccgacgccaagtttaac 5908312  T
Q  103 acacatgctagatatcctaggtgttttctagtaggggtgtttca 146  Q
    ||||||||||||||||||||||| ||||||||| ||||||||||    
T  5908311 acacatgctagatatcctaggtgatttctagtaagggtgtttca 5908268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 67 - 148
Target Start/End: Original strand, 6735977 - 6736058
Alignment:
Q  67 ttattgtaacttcaatgtatccgacgccaagttta-cacacatgctagatatcctaggtgttttctagtaggggtgtttcagg 148  Q
    ||||||||| || ||||||||| | ||||| |||| |||||||||||||||||||||||  ||||||||| ||||||||||||    
T  6735977 ttattgtaattttaatgtatccaatgccaaatttaacacacatgctagatatcctaggtaatttctagta-gggtgtttcagg 6736058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 67 - 143
Target Start/End: Complemental strand, 13701813 - 13701736
Alignment:
Q  67 ttattgtaacttcaatgtatccgacgccaagttta-cacacatgctagatatcctaggtgttttctagtaggggtgtt 143  Q
    ||||||||| || ||||||||| | |||||||||| ||||||||||||||||||||||   |||||||| ||||||||    
T  13701813 ttattgtaattttaatgtatccaatgccaagtttaacacacatgctagatatcctaggaaatttctagtcggggtgtt 13701736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 67 - 143
Target Start/End: Complemental strand, 13712306 - 13712229
Alignment:
Q  67 ttattgtaacttcaatgtatccgacgccaagttta-cacacatgctagatatcctaggtgttttctagtaggggtgtt 143  Q
    ||||||||| || ||||||||| | |||||||||| ||||||||||||||||||||||   |||||||| ||||||||    
T  13712306 ttattgtaattttaatgtatccaatgccaagtttaacacacatgctagatatcctaggaaatttctagtcggggtgtt 13712229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 102 - 143
Target Start/End: Original strand, 5579377 - 5579418
Alignment:
Q  102 cacacatgctagatatcctaggtgttttctagtaggggtgtt 143  Q
    ||||||||||||||||||||||   |||||||||||||||||    
T  5579377 cacacatgctagatatcctaggaaatttctagtaggggtgtt 5579418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 121; Significance: 4e-62; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 4 - 143
Target Start/End: Original strand, 33301297 - 33301437
Alignment:
Q  4 tcagtggaactatttctgaggtaataggcgagaaattctatgatttgttcagagaatatttatttattgtaacttcaatgtatccgacgccaagttt-ac 102  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||| ||    
T  33301297 tcagtggaactatttctgaggtaataggcgagaaattctatgatttgttcatagaatatttatttattgtaacttcaatgtatccaacgccaagtttaac 33301396  T
Q  103 acacatgctagatatcctaggtgttttctagtaggggtgtt 143  Q
    ||||||||||||||||||||||| |||||||||||||||||    
T  33301397 acacatgctagatatcctaggtgatttctagtaggggtgtt 33301437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 166 - 230
Target Start/End: Complemental strand, 13929925 - 13929861
Alignment:
Q  166 atagtatagtgggaaggatatattttggcccaaaatgtggatgactattcatgcttggattgctc 230  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||| |||| |||||||||||    
T  13929925 atagtatagtgggaaggatatattttggcccaaaatgtggacgactatccatgtttggattgctc 13929861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 39 - 138
Target Start/End: Original strand, 31113832 - 31113933
Alignment:
Q  39 ttctatgatttgttcagagaatatttat-ttattgtaacttcaatgtatccgacgccaagttta-cacacatgctagatatcctaggtgttttctagtag 136  Q
    ||||||| ||| |||||||||| ||| | || |||||| || ||||||||| | |||||||||| |||||||||||||||||||||||  ||||||||||    
T  31113832 ttctatgttttattcagagaatttttttattgttgtaattttaatgtatccaatgccaagtttaacacacatgctagatatcctaggtaatttctagtag 31113931  T
Q  137 gg 138  Q
    ||    
T  31113932 gg 31113933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 32 - 143
Target Start/End: Complemental strand, 6406001 - 6405888
Alignment:
Q  32 cgagaaattctatgatttgttcagagaa-tatttatttattgtaacttcaatgtatccgacgccaagttta-cacacatgctagatatcctaggtgtttt 129  Q
    |||| |||||||| |||||||||||||| | |||| ||||||||| || ||||||||    |||||||||| | |||||||||||||||||| ||  |||    
T  6406001 cgagtaattctataatttgttcagagaaatttttaattattgtaattttaatgtatcaagtgccaagtttaacgcacatgctagatatcctatgtaattt 6405902  T
Q  130 ctagtaggggtgtt 143  Q
    |||||| |||||||    
T  6405901 ctagtatgggtgtt 6405888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 101 - 146
Target Start/End: Original strand, 8706833 - 8706878
Alignment:
Q  101 acacacatgctagatatcctaggtgttttctagtaggggtgtttca 146  Q
    |||| |||||||||||||||||||| ||||||||||||||||||||    
T  8706833 acactcatgctagatatcctaggtgatttctagtaggggtgtttca 8706878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 67 - 143
Target Start/End: Original strand, 5131558 - 5131636
Alignment:
Q  67 ttattgtaacttcaatgtatccgacgccaagttta-cacacatgctagatatcctaggt-gttttctagtaggggtgtt 143  Q
    ||||||||| || ||||||||| | ||||| |||| |||||||||||||||||||||||   |||||||||||||||||    
T  5131558 ttattgtaattttaatgtatccaatgccaaatttaacacacatgctagatatcctaggtaaatttctagtaggggtgtt 5131636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 92 - 143
Target Start/End: Original strand, 34256453 - 34256505
Alignment:
Q  92 gccaagttta-cacacatgctagatatcctaggtgttttctagtaggggtgtt 143  Q
    |||||||||| ||| |||||||||||||||||||  |||||||||||||||||    
T  34256453 gccaagtttaacactcatgctagatatcctaggtaatttctagtaggggtgtt 34256505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 67 - 143
Target Start/End: Complemental strand, 8519127 - 8519050
Alignment:
Q  67 ttattgtaacttcaatgtatccgacgccaagttta-cacacatgctagatatcctaggtgttttctagtaggggtgtt 143  Q
    ||||||| | || |||||||||   |||||||||| ||| |||||||||||||||||||  | |||||||||||||||    
T  8519127 ttattgtgattttaatgtatccactgccaagtttaacacgcatgctagatatcctaggtaatgtctagtaggggtgtt 8519050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 67 - 143
Target Start/End: Complemental strand, 28144237 - 28144160
Alignment:
Q  67 ttattgtaacttcaatgtatccgacgccaagttta-cacacatgctagatatcctaggtgttttctagtaggggtgtt 143  Q
    ||||||||| || ||||||||| | ||||| |||| || |||||||||||||| ||||   |||||||||||||||||    
T  28144237 ttattgtaattttaatgtatccaatgccaattttaacatacatgctagatatcataggaaatttctagtaggggtgtt 28144160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 121; Significance: 4e-62; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 4 - 139
Target Start/End: Original strand, 2696618 - 2696754
Alignment:
Q  4 tcagtggaactatttctgaggtaataggcgagaaattctatgatttgttcagagaatatttatttattgtaacttcaatgtatccgacgccaagttt-ac 102  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  2696618 tcagtggaactatttctgaggtaataggcgagaaattctatgatttgttcagagaatatttatttattgtaacttcaatgtatccgacgccaagtttaac 2696717  T
Q  103 acacatgctagatatcctaggtgttttctagtagggg 139  Q
    |||||| |||||||||||||||| |||||||||||||    
T  2696718 acacatcctagatatcctaggtgatttctagtagggg 2696754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 70 - 143
Target Start/End: Complemental strand, 31314491 - 31314417
Alignment:
Q  70 ttgtaacttcaatgtatccgacgccaagttta-cacacatgctagatatcctaggtgttttctagtaggggtgtt 143  Q
    |||||| || |||||||||   |||||||||| ||| ||||||||||||||||||   |||||||||||||||||    
T  31314491 ttgtaattttaatgtatccattgccaagtttaacactcatgctagatatcctaggaaatttctagtaggggtgtt 31314417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 108; Significance: 3e-54; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 4 - 146
Target Start/End: Complemental strand, 48477313 - 48477170
Alignment:
Q  4 tcagtggaactatttctgaggtaataggcgagaaattctatgatttgttcagagaatatttatttattgtaacttcaatgtatccgacgccaagttt-ac 102  Q
    |||||||||||||||| ||||||| |||| ||||||||||||||||||||||||||||| |||||||||||| || ||||||||||||||||||||| ||    
T  48477313 tcagtggaactatttcggaggtaacaggcaagaaattctatgatttgttcagagaatatctatttattgtaattttaatgtatccgacgccaagtttaac 48477214  T
Q  103 acacatgctagatatcctaggtgttttctagtaggggtgtttca 146  Q
    ||||||||||||||||||||||| ||||||||||||||||||||    
T  48477213 acacatgctagatatcctaggtgatttctagtaggggtgtttca 48477170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 4 - 146
Target Start/End: Original strand, 42786670 - 42786813
Alignment:
Q  4 tcagtggaactatttctgaggtaataggcgagaaattctatgatttgttcagagaatatttatttattgtaacttcaatgtatccgacgccaagttt-ac 102  Q
    |||||||||||||||| ||||||| |||| ||||||||||||||||||||||||||||| |||||||||||| || ||||||||||||||||||||| ||    
T  42786670 tcagtggaactatttcggaggtaacaggcaagaaattctatgatttgttcagagaatatctatttattgtaattttaatgtatccgacgccaagtttaac 42786769  T
Q  103 acacatgctagatatcctaggtgttttctagtaggggtgtttca 146  Q
    ||| ||||||||||||||||||| ||||||||||||||||||||    
T  42786770 acaaatgctagatatcctaggtgatttctagtaggggtgtttca 42786813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 67 - 143
Target Start/End: Original strand, 21959444 - 21959521
Alignment:
Q  67 ttattgtaacttcaatgtatccgacgccaagttta-cacacatgctagatatcctaggtgttttctagtaggggtgtt 143  Q
    ||||||||| || ||||||||| | |||||||||| ||||||||||||||||||||||   |||||||||||||||||    
T  21959444 ttattgtaattttaatgtatccaatgccaagtttaacacacatgctagatatcctaggaaatttctagtaggggtgtt 21959521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 67 - 146
Target Start/End: Complemental strand, 4340394 - 4340314
Alignment:
Q  67 ttattgtaacttcaatgtatccgacgccaagttta-cacacatgctagatatcctaggtgttttctagtaggggtgtttca 146  Q
    ||||||||| || |||| ||||  ||||||||||| |||||||||||||||||||||||  | ||||||||||||||||||    
T  4340394 ttattgtaattttaatgcatccaccgccaagtttaacacacatgctagatatcctaggtaatgtctagtaggggtgtttca 4340314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 67 - 146
Target Start/End: Complemental strand, 3080707 - 3080627
Alignment:
Q  67 ttattgtaacttcaatgtatccgacgccaagttt-acacacatgctagatatcctaggtgttttctagtaggggtgtttca 146  Q
    |||||| || || ||||||||| | ||||||||| |||||||||||||||||| |||||  | ||||||||||||||||||    
T  3080707 ttattgaaattttaatgtatccaatgccaagtttcacacacatgctagatatcataggtaatgtctagtaggggtgtttca 3080627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 67 - 146
Target Start/End: Original strand, 3079261 - 3079341
Alignment:
Q  67 ttattgtaacttcaatgtatccgacgccaagttta-cacacatgctagatatcctaggtgttttctagtaggggtgtttca 146  Q
    |||||| || || ||||||||| | | |||||||| ||||||||||||||||| |||||  | ||||||||||||||||||    
T  3079261 ttattgaaattttaatgtatccaatgtcaagtttaacacacatgctagatatcataggtaatgtctagtaggggtgtttca 3079341  T

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Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 101 - 143
Target Start/End: Complemental strand, 19802060 - 19802018
Alignment:
Q  101 acacacatgctagatatcctaggtgttttctagtaggggtgtt 143  Q
    |||| |||||||||||||||||||  |||||||||||||||||    
T  19802060 acactcatgctagatatcctaggtaatttctagtaggggtgtt 19802018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 98; Significance: 2e-48; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 6 - 146
Target Start/End: Original strand, 14115716 - 14115857
Alignment:
Q  6 agtggaactatttctgaggtaataggcgagaaattctatgatttgttcagagaatatttatttattgtaacttcaatgtatccgacgccaagttt-acac 104  Q
    ||||||||||||||| |||||| | |||||||||||||||||||||||| |||||||||||||||||||| || ||||||||||| ||||||||| ||||    
T  14115716 agtggaactatttcttaggtaacatgcgagaaattctatgatttgttcaaagaatatttatttattgtaattttaatgtatccgatgccaagtttaacac 14115815  T
Q  105 acatgctagatatcctaggtgttttctagtaggggtgtttca 146  Q
    ||||||||||||||||||||| ||||||||| ||||||||||    
T  14115816 acatgctagatatcctaggtgatttctagtatgggtgtttca 14115857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 67 - 146
Target Start/End: Complemental strand, 15088111 - 15088031
Alignment:
Q  67 ttattgtaacttcaatgtatccgacgccaagttta-cacacatgctagatatcctaggtgttttctagtaggggtgtttca 146  Q
    |||||| || || ||||||||| | |||||||||| |||||||||||||||||||||||  | ||||||||||||||||||    
T  15088111 ttattgaaattttaatgtatccaatgccaagtttaacacacatgctagatatcctaggtaatgtctagtaggggtgtttca 15088031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 67 - 146
Target Start/End: Complemental strand, 22207156 - 22207076
Alignment:
Q  67 ttattgtaacttcaatgtatccgacgccaagttta-cacacatgctagatatcctaggtgttttctagtaggggtgtttca 146  Q
    |||||| || || ||||||||| | |||||||||| |||||||||||||||||||||||  | ||||||||||||||||||    
T  22207156 ttattgaaattttaatgtatccaatgccaagtttaacacacatgctagatatcctaggtaatgtctagtaggggtgtttca 22207076  T

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Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 67 - 146
Target Start/End: Complemental strand, 22210719 - 22210639
Alignment:
Q  67 ttattgtaacttcaatgtatccgacgccaagttta-cacacatgctagatatcctaggtgttttctagtaggggtgtttca 146  Q
    |||||| || || ||||||||| | |||||||||| |||||||||||||||||||||||  | ||||||||||||||||||    
T  22210719 ttattgaaattttaatgtatccaatgccaagtttaacacacatgctagatatcctaggtaatgtctagtaggggtgtttca 22210639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 67 - 146
Target Start/End: Complemental strand, 22219469 - 22219389
Alignment:
Q  67 ttattgtaacttcaatgtatccgacgccaagttta-cacacatgctagatatcctaggtgttttctagtaggggtgtttca 146  Q
    |||||| || || ||||||||| | |||||||||| |||||||||||||||||||||||  | ||||||||||||||||||    
T  22219469 ttattgaaattttaatgtatccaatgccaagtttaacacacatgctagatatcctaggtaatgtctagtaggggtgtttca 22219389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 67 - 144
Target Start/End: Complemental strand, 7898847 - 7898768
Alignment:
Q  67 ttattgtaacttcaatgtatccgacgccaagttta-cacacatgctagatatcctaggt-gttttctagtaggggtgttt 144  Q
    ||||||||| || ||||||||| | ||||| |||| |||||||||||||||||||||||   ||||||||||||||||||    
T  7898847 ttattgtaattttaatgtatccaatgccaaatttaacacacatgctagatatcctaggtaaatttctagtaggggtgttt 7898768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 67 - 143
Target Start/End: Complemental strand, 51843795 - 51843718
Alignment:
Q  67 ttattgtaacttcaatgtatccgacgccaagttta-cacacatgctagatatcctaggtgttttctagtaggggtgtt 143  Q
    ||||||||| || ||||||||| |  ||||||||| |||||| ||||||||||||||||  | ||||||| |||||||    
T  51843795 ttattgtaattttaatgtatccaataccaagtttaacacacacgctagatatcctaggtaatgtctagtaagggtgtt 51843718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0046 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: scaffold0046
Description:

Target: scaffold0046; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 7 - 143
Target Start/End: Complemental strand, 89751 - 89614
Alignment:
Q  7 gtggaactatttctgaggtaataggcgagaaattctatgatttgttcagagaatatttatttattgtaacttcaatgtatccgacgccaagttt-acaca 105  Q
    |||| |||||||||||||||| | |||||||||||||||||||||||||||||| |||||||||||||| || |||||||||    |||||||| || ||    
T  89751 gtggtactatttctgaggtaacaagcgagaaattctatgatttgttcagagaatttttatttattgtaattttaatgtatccagtaccaagtttaacgca 89652  T
Q  106 catgctagatatcctaggtgttttctagtaggggtgtt 143  Q
    |||||||||||||||||    |||||||||||||||||    
T  89651 catgctagatatcctagaaaatttctagtaggggtgtt 89614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000001; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 67 - 143
Target Start/End: Original strand, 20811254 - 20811331
Alignment:
Q  67 ttattgtaacttcaatgtatccgacgccaagttta-cacacatgctagatatcctaggtgttttctagtaggggtgtt 143  Q
    ||||||||| || ||||||||| | |||||||||| |||||||||||||||||||| ||   ||||||||||||||||    
T  20811254 ttattgtaattttaatgtatccaatgccaagtttaacacacatgctagatatcctacgtaaattctagtaggggtgtt 20811331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 67 - 143
Target Start/End: Original strand, 4844657 - 4844732
Alignment:
Q  67 ttattgtaacttcaatgtatccgacgccaagtttacacacatgctagatatcctaggtgttttctagtaggggtgtt 143  Q
    ||||||||| || ||||||||| |  ||||||||| |||||||||||||||||||||   |||||||||||||||||    
T  4844657 ttattgtaattttaatgtatccaatcccaagttta-acacatgctagatatcctaggaaatttctagtaggggtgtt 4844732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 92 - 143
Target Start/End: Complemental strand, 5556947 - 5556895
Alignment:
Q  92 gccaagttta-cacacatgctagatatcctaggtgttttctagtaggggtgtt 143  Q
    |||||||||| ||| |||||||||||||||||||  |||||||||||||||||    
T  5556947 gccaagtttaacactcatgctagatatcctaggtaatttctagtaggggtgtt 5556895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.000000000006; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 68 - 143
Target Start/End: Original strand, 2747311 - 2747387
Alignment:
Q  68 tattgtaacttcaatgtatccgacgccaagttta-cacacatgctagatatcctaggtgttttctagtaggggtgtt 143  Q
    |||||||| || ||||||||| | |||||||||| || |||| |||||||||||||||  |||||||||||||||||    
T  2747311 tattgtaattttaatgtatccaatgccaagtttaacatacattctagatatcctaggtaatttctagtaggggtgtt 2747387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 67 - 149
Target Start/End: Complemental strand, 5835135 - 5835052
Alignment:
Q  67 ttattgtaacttcaatgtatccgacgccaagtttac-acacatgctagatatcctaggtgttttctagtaggggtgtttcaggt 149  Q
    |||| |||| || ||||||||| | ||||||||||  || |||||||||||||||||||  ||| |||||||||||||||||||    
T  5835135 ttatggtaattttaatgtatccaatgccaagtttaatactcatgctagatatcctaggtaatttatagtaggggtgtttcaggt 5835052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 70 - 143
Target Start/End: Original strand, 14521885 - 14521959
Alignment:
Q  70 ttgtaacttcaatgtatccgacgccaagttta-cacacatgctagatatcctaggtgttttctagtaggggtgtt 143  Q
    |||||| || |||||||||   |||||||||| ||| |||||||||||||||||||  |||||||||||||||||    
T  14521885 ttgtaattttaatgtatccattgccaagtttaacactcatgctagatatcctaggtaatttctagtaggggtgtt 14521959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 51 - 143
Target Start/End: Complemental strand, 28034206 - 28034112
Alignment:
Q  51 ttcagagaatatttat-ttattgtaacttcaatgtatccgacgccaagttta-cacacatgctagatatcctaggtgttttctagtaggggtgtt 143  Q
    |||||||||| ||| | ||||||||| || ||||||||| | ||||| |||| ||||||||||||||||||| ||   |||||||||||||||||    
T  28034206 ttcagagaatttttttattattgtaattttaatgtatccaatgccaattttaacacacatgctagatatccttggaaatttctagtaggggtgtt 28034112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 67 - 146
Target Start/End: Complemental strand, 19440579 - 19440499
Alignment:
Q  67 ttattgtaacttcaatgtatccgacgccaagttta-cacacatgctagatatcctaggtgttttctagtaggggtgtttca 146  Q
    ||||||||| || |||||| || | |||||||||| |||||| ||||||||||||||||  ||||||| |||| |||||||    
T  19440579 ttattgtaattttaatgtacccaatgccaagtttaacacacacgctagatatcctaggtaatttctagcagggatgtttca 19440499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 68 - 123
Target Start/End: Complemental strand, 37489222 - 37489166
Alignment:
Q  68 tattgtaacttcaatgtatccgacgccaagttta-cacacatgctagatatcctagg 123  Q
    |||||||| || ||||||||| | |||||||||| ||||||||||||||||||||||    
T  37489222 tattgtaattttaatgtatccaatgccaagtttaacacacatgctagatatcctagg 37489166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 92 - 143
Target Start/End: Complemental strand, 18110915 - 18110863
Alignment:
Q  92 gccaagttta-cacacatgctagatatcctaggtgttttctagtaggggtgtt 143  Q
    |||||||||| ||| ||||||||||||||||||   |||||||||||||||||    
T  18110915 gccaagtttaacactcatgctagatatcctaggaaatttctagtaggggtgtt 18110863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0158 (Bit Score: 35; Significance: 0.00000000009; HSPs: 2)
Name: scaffold0158
Description:

Target: scaffold0158; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 70 - 143
Target Start/End: Original strand, 230 - 304
Alignment:
Q  70 ttgtaacttcaatgtatccgacgccaagttta-cacacatgctagatatcctaggtgttttctagtaggggtgtt 143  Q
    |||||| || |||||||||   |||||||||| ||| |||||||||||||||||||  |||||||||||||||||    
T  230 ttgtaattttaatgtatccattgccaagtttaacactcatgctagatatcctaggtaatttctagtaggggtgtt 304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0158; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 92 - 143
Target Start/End: Original strand, 37709 - 37761
Alignment:
Q  92 gccaagttta-cacacatgctagatatcctaggtgttttctagtaggggtgtt 143  Q
    |||||||||| ||| |||||||||||||||||||  |||||||||||||||||    
T  37709 gccaagtttaacactcatgctagatatcctaggtaatttctagtaggggtgtt 37761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0043 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 67 - 143
Target Start/End: Original strand, 70367 - 70444
Alignment:
Q  67 ttattgtaacttcaatgtatccgacgccaagttta-cacacatgctagatatcctaggtgttttctagtaggggtgtt 143  Q
    ||||||||| || ||||||| | | |||||||||| ||||||||||||||||||||||   | |||||||||||||||    
T  70367 ttattgtaattttaatgtattcaatgccaagtttaacacacatgctagatatcctaggaaatgtctagtaggggtgtt 70444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 92 - 143
Target Start/End: Complemental strand, 41527702 - 41527650
Alignment:
Q  92 gccaagttta-cacacatgctagatatcctaggtgttttctagtaggggtgtt 143  Q
    |||||||||| ||| |||||||||||||||||||  |||||||||||||||||    
T  41527702 gccaagtttaacactcatgctagatatcctaggtaatttctagtaggggtgtt 41527650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0060 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0060
Description:

Target: scaffold0060; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 101 - 138
Target Start/End: Original strand, 45458 - 45495
Alignment:
Q  101 acacacatgctagatatcctaggtgttttctagtaggg 138  Q
    ||||||||||||||||||||||||  ||||||||||||    
T  45458 acacacatgctagatatcctaggtaatttctagtaggg 45495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 67 - 146
Target Start/End: Original strand, 66229 - 66310
Alignment:
Q  67 ttattgtaacttcaatgtatccgacgccaagttta-cacac-atgctagatatcctaggtgttttctagtaggggtgtttca 146  Q
    ||||||||| || || ||| || | |||||||||| ||||| ||||||||||| ||||||  ||||||||||||||||||||    
T  66229 ttattgtaattttaacgtacccaatgccaagtttaacacaccatgctagatattctaggtaatttctagtaggggtgtttca 66310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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