View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3743_low_36 (Length: 258)
Name: NF3743_low_36
Description: NF3743
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3743_low_36 |
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Alignment Details
Target: chr3 (Bit Score: 75; Significance: 1e-34; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 24 - 106
Target Start/End: Complemental strand, 47706977 - 47706895
Alignment:
| Q |
24 |
gtatcatgtatagctgttaataaaagtttaaaaaatggaaagagaggttttctctttttgttgaagaagcaagaacttgcagg |
106 |
Q |
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| T |
47706977 |
gtatcatgtatagctgttaataaaactttcaaaaatggaaagagaggttttctctttttgttgaagaagcaagaacttgcagg |
47706895 |
T |
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Target: chr3; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 163 - 243
Target Start/End: Complemental strand, 47706838 - 47706758
Alignment:
| Q |
163 |
ctaataagtaaagttgtaggatgaaaggttcttgtttgtcttttagaaattctgaaagttttttgtctggtttaagtgttg |
243 |
Q |
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| T |
47706838 |
ctaataagtaaagttctaggatgaaaggttcttgtttgtcttttagaaattctgaaagttttttctctggtttaagtgttg |
47706758 |
T |
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