View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3743_low_38 (Length: 255)
Name: NF3743_low_38
Description: NF3743
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3743_low_38 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 185; Significance: 1e-100; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 204
Target Start/End: Complemental strand, 2070229 - 2070025
Alignment:
| Q |
1 |
ggagtgatgacatcattgcaccaccactaggagtagctacatcgctgcaatttggtttgaaggggctggtggcggcgcctgtgagga-ggggaaaaagct |
99 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||| |||||||||||| |
|
|
| T |
2070229 |
ggagtgatgacatcattgcaccaccaccaggagtagctacatcgctgcaatttggattgaaggggctggtggcggcgcttgtgaggaaggggaaaaagct |
2070130 |
T |
|
| Q |
100 |
gcgctgcaattcttctacaagcgactttgcatacttcgatacaaactcatcaaacaagggaataattgaatttgattctctgttaactgtcaaagttttc |
199 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2070129 |
gcgctgcaattcttctacaagcgactttgcatacttcgatacaaactcatcaaacaagggaataattgaatttgattctctgttaactgtcaaagttttc |
2070030 |
T |
|
| Q |
200 |
tctaa |
204 |
Q |
| |
|
||||| |
|
|
| T |
2070029 |
tctaa |
2070025 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 181; E-Value: 7e-98
Query Start/End: Original strand, 1 - 204
Target Start/End: Complemental strand, 2074575 - 2074371
Alignment:
| Q |
1 |
ggagtgatgacatcattgcaccaccactaggagtagctacatcgctgcaatttggtttgaaggggctggtggcggcgcctgtgagga-ggggaaaaagct |
99 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||| |||||||||||| |
|
|
| T |
2074575 |
ggagtgatgacatcattgcaccaccactaggagtagctacatcgctgcaatttggattgaaggggctggtggcggcgctggtgaggaaggggaaaaagct |
2074476 |
T |
|
| Q |
100 |
gcgctgcaattcttctacaagcgactttgcatacttcgatacaaactcatcaaacaagggaataattgaatttgattctctgttaactgtcaaagttttc |
199 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2074475 |
gcgctgcaattcttctacaagcgactttgcatacttcgatacaaactcatcaaataagggaataattgaatttgattctctgttaactgtcaaagttttc |
2074376 |
T |
|
| Q |
200 |
tctaa |
204 |
Q |
| |
|
||||| |
|
|
| T |
2074375 |
tctaa |
2074371 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 43031893 - 43031841
Alignment:
| Q |
1 |
ggagtgatgacatcattgcaccaccactaggagtagctacatcgctgcaattt |
53 |
Q |
| |
|
||||||||||| |||| ||||||||||||| |||||||||||||||||||||| |
|
|
| T |
43031893 |
ggagtgatgacctcatagcaccaccactagcagtagctacatcgctgcaattt |
43031841 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 24718796 - 24718845
Alignment:
| Q |
1 |
ggagtgatgacatcattgcaccaccactaggagtagctacatcgctgcaa |
50 |
Q |
| |
|
|||| |||||| |||| ||||||||||||| ||||||||||||||||||| |
|
|
| T |
24718796 |
ggagggatgacctcatcgcaccaccactagcagtagctacatcgctgcaa |
24718845 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 42268003 - 42267954
Alignment:
| Q |
1 |
ggagtgatgacatcattgcaccaccactaggagtagctacatcgctgcaa |
50 |
Q |
| |
|
|||| |||||| |||| |||||||||||| ||||||||||||||||||| |
|
|
| T |
42268003 |
ggagggatgacctcatcacaccaccactagcagtagctacatcgctgcaa |
42267954 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University