View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3743_low_4 (Length: 818)
Name: NF3743_low_4
Description: NF3743
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3743_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 533; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 533; E-Value: 0
Query Start/End: Original strand, 20 - 675
Target Start/End: Complemental strand, 36458701 - 36458064
Alignment:
| Q |
20 |
aaacgtaatttaatttacggtgtcgattctctagaattttctaaattattcaggctgaagtctggactagtcaacagtggagtttcttgggttacatttc |
119 |
Q |
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| T |
36458701 |
aaacgtaatttaatttacggtgtcgattctctagaatttgctaaattattcagactgaagtctggactagtcaacagtggagtttcttgggttacatttc |
36458602 |
T |
|
| Q |
120 |
acagctcatatgattttgggtatctagttaagattttgactcagaattacttaccgtctcgattggaggaattcttaagcatcttaacg-aaatattttg |
218 |
Q |
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| T |
36458601 |
acagctcatatgattttgggtatctagttaagattttgactcagaattacttaccgtctcgattggaggaattcttaagcatcttaacacaaatattt-g |
36458503 |
T |
|
| Q |
219 |
gacggaatgtctatgatatgaagtatatgatcaaattctgcaacttatatggtggtctggaacgtgttgccactaaactcaaggtcagccgggcggtcgg |
318 |
Q |
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| T |
36458502 |
gacagaatgtctatgatatgaagtatatgatcaaattctgcaacttatatggtggtctggaacgtgttgccactaaactcaaggtcagccgggcggtcgg |
36458403 |
T |
|
| Q |
319 |
aaactctcatcaagccgcgtcagatagtttgttgacatggcaagcttttaagaagatgaaggacatttattttgtcaacaatggaatcactatgcacgca |
418 |
Q |
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| T |
36458402 |
aaactctcatcaagccgcgtcagatagtttgttgacatggcaagcttttaagaagatgaaggacatttattttgtcaacaatggaatcactatgcacgca |
36458303 |
T |
|
| Q |
419 |
ggggtgttatttggtttagaagtgacagtttaggattagaaaaagaaaattgtaaaaatatattggtattctttgttttggaatcaacgttattacttta |
518 |
Q |
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| T |
36458302 |
ggggtgttatttgggttagaagtgacagtttaggattagaaaaagaaaattgtaaaaatatattggtattctttgttttggaatcaacgttattacttta |
36458203 |
T |
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| Q |
519 |
atgtctatattactactttagtttctctaaagcttatcatgaattagaaacttgaatgaaatagagagccacataaagtgaaagcctattatccaaccaa |
618 |
Q |
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| T |
36458202 |
atgtctatattactactttagtttctctaaagcttatca-----------------tgaaatagagagccacataaagtgaaagcctattatccaaccaa |
36458120 |
T |
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| Q |
619 |
tggcatactcctcctaggtgatagaaataatttatagcaagctctaattcaaaataa |
675 |
Q |
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| T |
36458119 |
tggcatgctcctcctaggtgatacaagtaatttgtag-aagctctaagtcgaaataa |
36458064 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 105; E-Value: 5e-52
Query Start/End: Original strand, 676 - 800
Target Start/End: Complemental strand, 36457924 - 36457800
Alignment:
| Q |
676 |
aaataagatgcaaatgagtacatgaggtactcaaccccaatacacaatgttcaacttctataacattctaaatagcataaactccagccgcagaatgtca |
775 |
Q |
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| T |
36457924 |
aaataagatgcatatgagtacataaggtactcaaccccaatacacaatgttcaacttttataacattctaaatagcataaactccagccagagaatgtca |
36457825 |
T |
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| Q |
776 |
ttttcggtctgctacctattttcga |
800 |
Q |
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| T |
36457824 |
ttttcggtctgctacctattttcga |
36457800 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 317 - 391
Target Start/End: Complemental strand, 40874816 - 40874742
Alignment:
| Q |
317 |
ggaaactctcatcaagccgcgtcagatagtttgttgacatggcaagcttttaagaagatgaaggacatttatttt |
391 |
Q |
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| T |
40874816 |
ggaaagtctcatcaagctggatcagatagtttgttgacgtggcatgcatttaagaaaatgatggatacttatttt |
40874742 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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