View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3743_low_42 (Length: 250)
Name: NF3743_low_42
Description: NF3743
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3743_low_42 |
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Alignment Details
Target: chr4 (Bit Score: 103; Significance: 2e-51; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 31 - 213
Target Start/End: Complemental strand, 9569996 - 9569814
Alignment:
| Q |
31 |
gcaagtactccaactgtctccatcaatgaaacagaagaaaactcgaccgcagcaaagtttgctaggctgcaaggaagccgcacaaaacaagcctggaggc |
130 |
Q |
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| T |
9569996 |
gcaaatactctaactgtatccaccaatcaaacagaagaaaacacgacagcggtaaactttgccaggccacaaggaagccgcaaaaaacaagcctggaggc |
9569897 |
T |
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| Q |
131 |
tcgacagaaaaacggtgggatcgacccaagaaacttccagaacccccactgccaaacagtaaccacaaaccagaaaaacagca |
213 |
Q |
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| T |
9569896 |
tgcccagaaaaacggtgggatcgaccgaagaaacttccagaacccccactgccaaacagtaaccacataccagaaagacagca |
9569814 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 134 - 231
Target Start/End: Original strand, 9606009 - 9606106
Alignment:
| Q |
134 |
acagaaaaacggtgggatcgacccaagaaacttccagaacccccactgccaaacagtaaccacaaaccagaaaaacagcaccagatgagccaaaaaca |
231 |
Q |
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| T |
9606009 |
acagaaaaacagtgggattgacccaagaaacttccagaacccccaccgccaaacagcaaccacagaccagaaaagcagcaacagatgagccaaaaaca |
9606106 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 102 - 194
Target Start/End: Original strand, 9593315 - 9593407
Alignment:
| Q |
102 |
aggaagccgcacaaaacaagcctggaggctcgacagaaaaacggtgggatcgacccaagaaacttccagaacccccactgccaaacagtaacc |
194 |
Q |
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| T |
9593315 |
aggaagccgcacaaaacaagcctgaaagctgcacataaaaacggtgggatagactcaagacacttccagaacccccactgccaaacagcaacc |
9593407 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 90 - 171
Target Start/End: Original strand, 9581509 - 9581590
Alignment:
| Q |
90 |
tgctaggctgcaaggaagccgcacaaaacaagcctggaggctcgacagaaaaacggtgggatcgacccaagaaacttccaga |
171 |
Q |
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| T |
9581509 |
tgctaggccgcaaggaagccacacacaacaagcctgaacgctgcacagaaaaacggtgggatcgacccaggaaacttccaga |
9581590 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 90 - 171
Target Start/End: Original strand, 9587204 - 9587285
Alignment:
| Q |
90 |
tgctaggctgcaaggaagccgcacaaaacaagcctggaggctcgacagaaaaacggtgggatcgacccaagaaacttccaga |
171 |
Q |
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| T |
9587204 |
tgctaggccgcaaggaagccacacacaacaagcctgaacgctgcacagaaaaacggtgggatcgacccaggaaacttccaga |
9587285 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 207 - 250
Target Start/End: Original strand, 9602197 - 9602240
Alignment:
| Q |
207 |
aacagcaccagatgagccaaaaacaaaaccatatatgcatcagc |
250 |
Q |
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| T |
9602197 |
aacagcaccagatgagccaaaaacaaaaccatatatgcatcagc |
9602240 |
T |
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