View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3743_low_44 (Length: 247)
Name: NF3743_low_44
Description: NF3743
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3743_low_44 |
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Alignment Details
Target: chr1 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 19576788 - 19576549
Alignment:
| Q |
1 |
caaatttgaaaaagaataatatctagtttaaaggcttccgagttcagaaacaatacttactaaaatcaaaccagttttttcaagatcaagaaccaccagc |
100 |
Q |
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| T |
19576788 |
caaatttgaaaaagaataatatctagtttaaaggcttccgagttcagaaacaatacttactaaaatcaaaccagttttttcaagatcaagaaccaccaac |
19576689 |
T |
|
| Q |
101 |
tgagattttaaagtggacataaacaacctttactcatattgagatatctagaattgtagatttctttcacattaaaaagtccaagtcctataaatcaaag |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19576688 |
tgagattttaaagtggacataaacaacctttactcatattgagatgtctagaattgtagatttctttcacattaaaaagtccaagtcctataaatcaaag |
19576589 |
T |
|
| Q |
201 |
gtcatccatactctctttcacatagatctacgaatctctg |
240 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
19576588 |
gtcatccatactctctttcacatagatctacgaatctctg |
19576549 |
T |
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