View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3743_low_45 (Length: 243)
Name: NF3743_low_45
Description: NF3743
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3743_low_45 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 41847692 - 41847456
Alignment:
| Q |
1 |
ggaagagaaaaagtgaaagtagcagtggaagtgagaaaaaaggttataggggtggtaatagtaacaatgggggtgtggatagagatagtgatggaacaac |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41847692 |
ggaagagaaaaagtgaaagtagcagtggaagtgagaaaaaaggttataggggtggtaatagtaacaatgggggtgtggatagagatagtgatggaacaac |
41847593 |
T |
|
| Q |
101 |
aactgaaacagatagaagcaaattagtgttttttgatagaaggaatgagtttgagttagaggatttgctacgagcttctgcagagatgcttgggaagggt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41847592 |
aactgaaacagatagaagcaaattagtgttttttgatagaaggaatgagtttgagttagaggatttgctacgagcttctgcagagatgcttgggaagggt |
41847493 |
T |
|
| Q |
201 |
agtttgggaactgtttatagagctgttcttgatgatg |
237 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41847492 |
agtttgggaactgtttatagagctgttcttgatgatg |
41847456 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 126 - 237
Target Start/End: Original strand, 26889516 - 26889627
Alignment:
| Q |
126 |
gtgttttttgatagaaggaatgagtttgagttagaggatttgctacgagcttctgcagagatgcttgggaagggtagtttgggaactgtttatagagctg |
225 |
Q |
| |
|
|||||||||||||| ||||||| |||||||| || |||||| | || || ||||| |||||||||||||||||||||||||||||||||||||| || | |
|
|
| T |
26889516 |
gtgttttttgataggaggaatggatttgagttggaagatttgttgcgtgcatctgctgagatgcttgggaagggtagtttgggaactgtttatagggcag |
26889615 |
T |
|
| Q |
226 |
ttcttgatgatg |
237 |
Q |
| |
|
| |||||||||| |
|
|
| T |
26889616 |
tgcttgatgatg |
26889627 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 149 - 237
Target Start/End: Original strand, 22837638 - 22837726
Alignment:
| Q |
149 |
gtttgagttagaggatttgctacgagcttctgcagagatgcttgggaagggtagtttgggaactgtttatagagctgttcttgatgatg |
237 |
Q |
| |
|
||||||| ||||||||||||| || ||||| || || ||| | |||||||||| || |||||||| |||| ||||||||||||||||| |
|
|
| T |
22837638 |
gtttgagctagaggatttgcttcgtgcttcggcggaaatgttggggaagggtaccttaggaactgtctataaagctgttcttgatgatg |
22837726 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University